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  1. Region 'REG00000052'

Cis-regulatory Region

Name

Ci-Sna -3200/codon 15 delta 262bp

Short name

n/a

Region ID

REG00000052

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Levine Team (2006-10-01)

Annotator

Clara Degos (2010-07-23)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

This region extends from 3,2Kb upstream ustream of cDNA AF002987 to 1,3 kb downstream (corresponding to the midle of exon 2). positions -618 to -356 (minimal muscle mesencyme enhancer were deleted.


This region is named 4.5kb Ci-sna Exo delta 51 in the paper (Erives et al 2000).

Hierarchy of Regulatory Regions

Modification of Ci-Sna -3200/codon 15 by deletion

Regulated gene(s)

KH2012:KH.C3.751 (SNAI1; SNAI2; SNAI3)

Construct(s) made to test this region

CONS00000036: pCi-Snail -3200/codon 15 delta 262bp::NLS-LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,676,0835,680,582

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,676,083 / 5,680,582] on scaffold KhC3

JGI v1.0 version of the sequence -3.2 kb to codon 15 of Ci-sna.
The deleted sequence was replaced by "-".

Show sequence

Length: 4,500

ATAATAAAATACGTAAAGGATTTTTTGATACGGACCAATTTGCGAATCCGCAAGGACTGT
AAAGTATAGGATAGAGGTTGATATATGAATAATAAGTGCTATTTTGTACACCTCATCAGA
GAAATGGCTAACTGTAACTTGCGATAAATTCTTTCGCAGTTTACGGTGTATCGTGGGCTT
TAATAAACAATGCACCTGTTTAAAACCGGCGTTCTGTATAGCGCCTATCACATTACCACG
CCTCGTGTGTCTTTACCCAAGAGACGTATATTTCAATCACTTAACGGCTTAATTCGAAAC
CGAGCAAGTGTTATGGTTAGATACGTCATGTTTCTAATGCAAGGGTATTTTAATCTATAT
CTCTATATACTATTAATAGACAATCATTATTCCTATGTAGTTAGAATTTCATCACATTCA
GTATTTTATTTGTATATAAGCCATCTTTGATTTTAAAATAATTTTATTGCCGCCTTAGCC
GAGAGCAAACTAATAACTGGACTTTAAACGATACGTCACTCGTTACGGATTTTTTCCAGA
CTATATTAAAGTGACGTCAGTGAAATGAATGCATGCGCGTGTCGCACTTTGTTATTTAAT
GACGTAATCTTGATGCGGCCACATAGATTAATGGGTGCACCGAGTACTTTCATCATACCA
GGCGTCCGGTGCCGAAGCAACAGGCGGCTAACCGAAATAGAACAACGACCAGCAGGAGCG
AGCCAACAACTGTTACCGAAGCGGTCCACTTAATCCCGGGACACGCGCGAACTGTACGCG
ACAAATATCAAAATATAAACAACGGCATTCAACTATTAATATTGCGCCTTTGGTTACGTT
CAACCGAGTTTTAAAAACCTGTCACATTTTTAAACTGAAGGCTGTCTGTATAGTCATCGA
AAGAATATCCCACGACCCAGCGTGCACACTTGGCCCGTATAACCTTCCGTTTGTGTTGGT
TTTTATTCCGAATACTCCAAATGATTGTAGCGCCGGGATACCTTAGTTGGCTTAGTACAC
CGATAGCAGACCGCCCCTCCACGAAATACAGACACTCTGTTTGTCACCAGTGTTCTATCA
ACTGTCTCGTTTAGCTACGGTGTACACATGCTTCTACATACGTTCCGCGGGTGTCTATTG
TTGCCCTTGTCCTTACAGTGCGTCTAGAGTAAACTAACCAAGATACGATTGCGTATACCG
GGACAATAGGATAACATTTGCACGGAGACACGTGGTCAACTATACGAGGCACGTAACCGC
AGGGCACTACCAAAGTCCGGTTATTTAAGTTTATATTTTTGCCTAGCCGTCGAAAAAACA
TGCATATATTAAAATTAATAAAACCGTTTATTCTCTATATCGTACATTGGTTATGAGCGC
TTTAGCACCAAAATATAACGAGTTCTATAAACGCAGTTAAATTCAATTGATTTTACCTTA
CCAGCAGGCAGTTTCTCTCCACAAACATTTAAGCCTCATTCCTAACGTGCGGGAATTCTC
CTCATCCGATAGAAACATATTAGTGTACGGACACTTCTCCATTCTTTGACAATGTGGTGA
CAGGGGAATATCATTTACGACAGTGCGAAGCGTCTCCTTTACCGAATAAACCTCATGATT
CTAACATTAAAGTCGTTGCAATAGGTACGGATATTCTAAAATTGAAACTATGCACAATCA
CGGGTATACCATATATATATATAGTAGGGTGGGAAAAATAGGACACCATTTTATTCTATT
TTCTCGTCCCATTTTGTAGAAAACAAGGAACATTTAAAGAATTATAAAACCGTATCCGTA
CGACTACCATAGACCGTTGTAAATTGTTTAAACACGATCAAGATATTTGGATATTATGTG
CTAACGGTGTCTCATCTACCCCCACCCTATTATAACACCGAACGTTAAAAATTCATTGCA
CCGAATGTTCCACCGTTTTAGTGTATTAGCGGATTCAGAATGTCGCACGCGTTCAAAGCG
ACCCAGTACCTATTGGTGTCAATTAACACCATTTTGGATCGAATTTTCGGATGAGCCTTT
GTGTGAAAATTAGCGGTTCACTCTGCCGGCCATCCTCAGGTTGAGATAACGCATCTATCG
CAAAGTAGCAGCTGAAGTGAAGACTTGCGATCGGAGAGAATTTAATTTCGATATTTTTAT
TTGCATTGATTTACAAAAATATTTATACAGTTTTTGATTTTGAAAACAATAGAGTAGGGT
GGGGGAAAATGGGATACCCTTTCATTCTATTTCCTTGTTCCATTTAGTAGTAAACAAAGA
CCTTTTCAGAGAATTATAAAACCGTATTCTCACGACTCCCACAGCCCTTTGTTAATTATT
TAAAACATGATTAGAATATTTAAATATAATGTCCCAAAGATGCCCCATCTTCCGCCACAG
TACTATACTTGAAAAATATATTGTTCTGCCCCTGAAATAGGAACTTTAGGGGGAGATTTT
TCTTACGCACATGATAAATTAATATGTTGTTACCGATAAATTGTAGATACTTAAAATGAA
AAGGTCGCAATTGTATTTACCATTATAAAACAGAAGATCGGTGTGTTTTGCTGGACAAAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------CTCACCTGCCGCGCAGGATTGCTTCATATGGCAGAC
CGAGTTGAGTGGGAAATCATATTCTGGTTGCTTCGCTTATAGAGCTAGCTCACTAGAGAC
TAGAGTGTTGTGAATGATGAATCATTTGAATTAAGCATTTTGTTTAGTTGATCAAATGAG
TTTCAGTTTGATGTTCAGGACTGCTAAGTAATGCAGTGAAAGGAATTCTAAAGTGATTAT
ATTTAGAAATGGGCTATCAGTGCTTGATTACTGTTGCAGGGTTATTTAAAAATGCAGTCG
AACAGTCTAAGAAAGCTTAGCTATATTTGAAGGATTATGTATACTTATTTCATTAGAGCA
ATATTTTTTTTTTTATTTTAGACTTTTGGTACATATTCAAAATATCAAAATTCTCACTGT
GAAATATATTACTGTGATTACATCATGACCTCCGTCGAGCCCATGCTTTATCAAGGCAAG
CACGCCGTTCAGAAAAATGAAGGTATATATGCAGTCCTATTTATATTATAATTCATCGCG
GCAATTGTTTCTCTTATAAAAATCAAACGCGATCATTTTAAATGTTGTAAACAGAGCAGA
TGCCTTTGTAAATATGCATCATCTTGTACCGAGAATCCAGCAGAATTTTCCATGAGACTT
TCGTTCACGTAAAAGTTAAATTATTTTCGGAGGTTATTTGCGCACGGCGCGGTGTTGGAA
CTTTTCGCTAATCCGACTGTTTGTTTCCGCCTAAATTAATCACAAGTAACAGTTGCGATA
AAACAAGGAAACGACTGGATCTCCCGCTGTTATAGGATGCCACCTCGCACGTCAAACCCC
ACACATACCGTAACTTTTACCTAAATAATGGAAATGCAATTATTTAATTACCTGTGGAAG
AATCCGGACTAAGCCGAGATTGCCTAATATAGTTAGACAAGGTCCGGTCACTCGGGCTAA
ACATTCAAACAGGTGGTGCCTAAAATAGATGCGAGCTGGTACCAAGTGTTTTGCTCGCAC
CGTTCCTCCCATGGGTGACTGGCTGGCTTTAAGGATGGAACGCTACCGATATAAGTTTGA
CGTAATCTCGGTCTGGATGAAAGCGTTGACAGCACTACCTGTTTGCACACTCGGCACAAC
TGCTGCTTATGGAAGTGAACTGCGGTTTCCCGATATGGAAACCGTATGGCTCAATAACAA
ATTATTTACGGCCCTCAGGACAGCCCGCCATGCAGTCTGCACCATATTTTTAATCCTGGC
TTTTGCCAAGACCAAATATTACAAAGTTAAATCTTCTTTAGGCGAATCTACCCGTCCTTG
CACTTTGAGTGGAGATGACAGTTTTTACTGCAGCGGCGAATCAACAAATTCGACGTCATC
TCCCACGTCATCCATTACGTCATCGCGTTCATGTGGACCTGACAGCGACGAAGGTTTTCC
GAGACAGGATGACCTGGATTTGCGTGACAAAGCCAGCAAAAACTTGCAACATAGCGTTGA
GCTTTTTTGCCCTATTAAGAGCAAGTCAGTTGATCATGATAACGATTTAATGCCTATGGA
TCTCTCGTGCAAAAAGAGAACTTTCCCAAAACAAAATTGCAAAACTGCTAGCATGCCTAA
AACGAGCCCAACCATAAAATCAGAACCGATTGATGACTATCCAGCTTCACTTACACGCAA

Reference(s)

Erives et al. (2000). Characterization of a maternal T-Box gene in Ciona intestinalis. Dev. Biol. 225(1):169-78

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