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CIS-REGULATION

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  1. Clone 'AHC0AAA193YB08' > 
  2. Region 'REG00000055'

Cis-regulatory Region

Name

Ci-Sna -1700/-157

Short name

n/a

Region ID

REG00000055

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(complex_region)

Author

Albert Erives (2006-10-01)

Annotator

Patrick Lemaire (2007-11-06)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Region extending from -1.7kb to -157 bp from sart of cDNA AF002987. Transcriptional activity s restricted to the B4.1 mesodermal lineages.

This region is named 1.5kb (syn and anti for the two constructs) in the paper (Erives et al 1998).

Hierarchy of Regulatory Regions

Modification of Ci-Sna -3200/codon 15 by deletion

Regulated gene(s)

KH2012:KH.C3.751 (SNAI1; SNAI2; SNAI3)

Construct(s) made to test this region

CONS00000041: pCi-Sna -1700/-157 pBra Syn::NLS-LacZ

CONS00000040: pCi-Sna -1700/-157 pBra Anti::NLS-LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,677,5835,679,125

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 bHLH n/a CAACTG [5,678,683 / 5,678,688]
2 T-Box n/a GATCCCACCT [5,678,737 / 5,678,746]
3 bHLH n/a CAACTG [5,678,786 / 5,678,791]
4 T-Box n/a TTTGGCACCT [5,678,873 / 5,678,882]
5 bHLH n/a CACCTG [5,678,929 / 5,678,934]
6 bHLH n/a CATATG [5,678,951 / 5,678,956]
7 bHLH n/a CATTTG [5,679,045 / 5,679,050]
8 bHLH n/a CAAATG [5,679,075 / 5,679,080]

Sequence

Aniseed Coordinates: [5,677,583 / 5,679,125] on scaffold KhC3

JGI versin1.0 assembly version of the sequence. E5 site is absent in this assembly.

Show sequence

Length: 1,543


CTCATCCGATAGAAACATATTAGTGTACGGACACTTCTCCATTCTTTGACAATGTGGTGA
CAGGGGAATATCATTTACGACAGTGCGAAGCGTCTCCTTTACCGAATAAACCTCATGATT
CTAACATTAAAGTCGTTGCAATAGGTACGGATATTCTAAAATTGAAACTATGCACAATCA
CGGGTATACCATATATATATATAGTAGGGTGGGAAAAATAGGACACCATTTTATTCTATT
TTCTCGTCCCATTTTGTAGAAAACAAGGAACATTTAAAGAATTATAAAACCGTATCCGTA
CGACTACCATAGACCGTTGTAAATTGTTTAAACACGATCAAGATATTTGGATATTATGTG
CTAACGGTGTCTCATCTACCCCCACCCTATTATAACACCGAACGTTAAAAATTCATTGCA
CCGAATGTTCCACCGTTTTAGTGTATTAGCGGATTCAGAATGTCGCACGCGTTCAAAGCG
ACCCAGTACCTATTGGTGTCAATTAACACCATTTTGGATCGAATTTTCGGATGAGCCTTT
GTGTGAAAATTAGCGGTTCACTCTGCCGGCCATCCTCAGGTTGAGATAACGCATCTATCG
CAAAGTAGCAGCTGAAGTGAAGACTTGCGATCGGAGAGAATTTAATTTCGATATTTTTAT
TTGCATTGATTTACAAAAATATTTATACAGTTTTTGATTTTGAAAACAATAGAGTAGGGT
GGGGGAAAATGGGATACCCTTTCATTCTATTTCCTTGTTCCATTTAGTAGTAAACAAAGA
CCTTTTCAGAGAATTATAAAACCGTATTCTCACGACTCCCACAGCCCTTTGTTAATTATT
TAAAACATGATTAGAATATTTAAATATAATGTCCCAAAGATGCCCCATCTTCCGCCACAG
TACTATACTTGAAAAATATATTGTTCTGCCCCTGAAATAGGAACTTTAGGGGGAGATTTT
TCTTACGCACATGATAAATTAATATGTTGTTACCGATAAATTGTAGATACTTAAAATGAA
AAGGTCGCAATTGTATTTACCATTATAAAACAGAAGATCGGTGTGTTTTGCTGGACAAAT
ATTGAGAAAATCTGTGGCGACAACTGTGGTCTGATTTACAGGCGAGTTGGACGGAGTTGA
CAGGTCGCGAAAGCGATCCCACCTTCGTGTCTGGGTTTCGAGGTGCCGCCCGTCGTGCAG
TAGCAACTGTGCGGTCAAGTTGAGAGCAAGAAGACACTACAGCGCGCTTTGAAGCGTCCA
AGCCGCCCGCTGAGCAGGGCGGATAGCTCGTTTGGCACCTCGTCTGGCATCGTCCGCACT
GTCAACCTTCTTCGTACAAACGTCCTCACCTGCCGCGCAGGATTGCTTCATATGGCAGAC
CGAGTTGAGTGGGAAATCATATTCTGGTTGCTTCGCTTATAGAGCTAGCTCACTAGAGAC
TAGAGTGTTGTGAATGATGAATCATTTGAATTAAGCATTTTGTTTAGTTGATCAAATGAG
TTTCAGTTTGATGTTCAGGACTGCTAAGTAATGCAGTGAAAGG

Reference(s)

Erives et al. (1998). Lineage-specific regulation of the Ciona snail gene in the embryonic mesoderm and neuroectoderm. Dev. Biol. 194(2):213-25

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