- Region 'REG00000059' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Region 'REG00000057' >
- Region 'REG00000056'
Cis-regulatory Region
Name
Ci-Sna -1700/-700
Short name
n/a
Region ID
REG00000056
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Albert Erives (2006-10-01)
Annotator
Patrick Lemaire (2007-11-06)
Curator
Delphine Dauga (2010-02-26)
region extending from -1.7 kb to -0.7 kb upstream of cDNA AF002987. No activity detected in either orientation.
This region is named -1.0kb (syn and anti for the two constructs) in the paper (Erives et al 1998).
Modification of Ci-Sna -1700/-157 by deletion
- Ci-Sna -3200/codon 15 REG00000051 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3200/codon 15 delta 262bp REG00000052 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3000/-68 REG00000053 [ regulatory_region (complex_region) ]
- Ci-Sna -2200/codon 15 REG00000054 [ regulatory_region (extended_promoter) ]
- Ci-Sna -1700/-157 REG00000055 [ regulatory_region (complex_region) ]
- Ci-Sna -650/87 REG00000058 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7 mutated REG00000059 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6 mutated REG00000060 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6/E5 mutated REG00000061 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6 mutated REG00000062 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6/E5 mutated REG00000063 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E5 mutated REG00000064 [ regulatory_region (extended_promoter) ]
- Ci-Sna -444/87 REG00000069 [ regulatory_region (extended_promoter) ]
- Ci-Sna -672/-168 REG00000065 [ regulatory_region (enhancer) ]
- Ci-Sna -618/-356 REG00000066 [ regulatory_region (enhancer) ]
- Ci-Sna -3200/codon 15 delta 1.5kb REG00000214 [ regulatory_region (extended_promoter) ]
5,677,5835,678,545
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,677,583 / 5,678,545] on scaffold KhC3
JGI v1.0 version of the region.
Show sequence
Length: 963
CTCATCCGATAGAAACATATTAGTGTACGGACACTTCTCCATTCTTTGACAATGTGGTGA
CAGGGGAATATCATTTACGACAGTGCGAAGCGTCTCCTTTACCGAATAAACCTCATGATT
CTAACATTAAAGTCGTTGCAATAGGTACGGATATTCTAAAATTGAAACTATGCACAATCA
CGGGTATACCATATATATATATAGTAGGGTGGGAAAAATAGGACACCATTTTATTCTATT
TTCTCGTCCCATTTTGTAGAAAACAAGGAACATTTAAAGAATTATAAAACCGTATCCGTA
CGACTACCATAGACCGTTGTAAATTGTTTAAACACGATCAAGATATTTGGATATTATGTG
CTAACGGTGTCTCATCTACCCCCACCCTATTATAACACCGAACGTTAAAAATTCATTGCA
CCGAATGTTCCACCGTTTTAGTGTATTAGCGGATTCAGAATGTCGCACGCGTTCAAAGCG
ACCCAGTACCTATTGGTGTCAATTAACACCATTTTGGATCGAATTTTCGGATGAGCCTTT
GTGTGAAAATTAGCGGTTCACTCTGCCGGCCATCCTCAGGTTGAGATAACGCATCTATCG
CAAAGTAGCAGCTGAAGTGAAGACTTGCGATCGGAGAGAATTTAATTTCGATATTTTTAT
TTGCATTGATTTACAAAAATATTTATACAGTTTTTGATTTTGAAAACAATAGAGTAGGGT
GGGGGAAAATGGGATACCCTTTCATTCTATTTCCTTGTTCCATTTAGTAGTAAACAAAGA
CCTTTTCAGAGAATTATAAAACCGTATTCTCACGACTCCCACAGCCCTTTGTTAATTATT
TAAAACATGATTAGAATATTTAAATATAATGTCCCAAAGATGCCCCATCTTCCGCCACAG
TACTATACTTGAAAAATATATTGTTCTGCCCCTGAAATAGGAACTTTAGGGGGAGATTTT
TCT
