- Region 'REG00000065'
Cis-regulatory Region
Name
Ci-Sna -672/-168
Short name
n/a
Region ID
REG00000065
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Albert Erives (2006-10-01)
Annotator
Patrick Lemaire (2007-11-06)
Curator
Delphine Dauga (2010-02-26)
The sequence below goes from -672bp and -168bp upstream of the start of cDNA AF002987. It recapitulates ci-san expression in the B4.1 mesodermal lineages (except the TVCs).
This region is named 504bp (syn and anti for the two constructs) in the paper (Erives et al 1998).
Modification of Ci-Sna -3200/codon 15 by deletion
- Ci-Sna -3200/codon 15 REG00000051 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3200/codon 15 delta 262bp REG00000052 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3000/-68 REG00000053 [ regulatory_region (complex_region) ]
- Ci-Sna -2200/codon 15 REG00000054 [ regulatory_region (extended_promoter) ]
- Ci-Sna -1700/-157 REG00000055 [ regulatory_region (complex_region) ]
- Ci-Sna -650/87 REG00000058 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7 mutated REG00000059 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6 mutated REG00000060 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6/E5 mutated REG00000061 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6 mutated REG00000062 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6/E5 mutated REG00000063 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E5 mutated REG00000064 [ regulatory_region (extended_promoter) ]
- Ci-Sna -444/87 REG00000069 [ regulatory_region (extended_promoter) ]
- Ci-Sna -672/-168 REG00000065 [ regulatory_region (enhancer) ]
- Ci-Sna -618/-356 REG00000066 [ regulatory_region (enhancer) ]
- Ci-Sna -3200/codon 15 delta 1.5kb REG00000214 [ regulatory_region (extended_promoter) ]
5,678,6115,679,114
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bHLH | n/a | CAACTG | [5,678,683 / 5,678,688] | |
| 2 | T-Box | n/a | GATCCCACCT | [5,678,737 / 5,678,746] | |
| 3 | bHLH | n/a | CAACTG | [5,678,786 / 5,678,791] | |
| 4 | T-Box | n/a | TTTGGCACCT | [5,678,873 / 5,678,882] | |
| 5 | bHLH | n/a | CACCTG | [5,678,929 / 5,678,934] | |
| 6 | bHLH | n/a | CATATG | [5,678,951 / 5,678,956] | |
| 7 | bHLH | n/a | CATTTG | [5,679,045 / 5,679,050] | |
| 8 | bHLH | n/a | CAAATG | [5,679,075 / 5,679,080] |
Aniseed Coordinates: [5,678,611 / 5,679,114] on scaffold KhC3
JGI version 1.0 of this region. site E5 is absent.
Show sequence
Length: 504
AATTGTATTTACCATTATAAAACAGAAGATCGGTGTGTTTTGCTGGACAAATATTGAGAA
AATCTGTGGCGACAACTGTGGTCTGATTTACAGGCGAGTTGGACGGAGTTGACAGGTCGC
GAAAGCGATCCCACCTTCGTGTCTGGGTTTCGAGGTGCCGCCCGTCGTGCAGTAGCAACT
GTGCGGTCAAGTTGAGAGCAAGAAGACACTACAGCGCGCTTTGAAGCGTCCAAGCCGCCC
GCTGAGCAGGGCGGATAGCTCGTTTGGCACCTCGTCTGGCATCGTCCGCACTGTCAACCT
TCTTCGTACAAACGTCCTCACCTGCCGCGCAGGATTGCTTCATATGGCAGACCGAGTTGA
GTGGGAAATCATATTCTGGTTGCTTCGCTTATAGAGCTAGCTCACTAGAGACTAGAGTGT
TGTGAATGATGAATCATTTGAATTAAGCATTTTGTTTAGTTGATCAAATGAGTTTCAGTT
TGATGTTCAGGACTGCTAAGTAAT
