Description

The sequence below extends from -359 to +87 bp of the upstream start of cDNA AF002987. The precise coordinates were unclear in the original article (+/- 10 bp). No trancriptional activity.


This region is named Ci-sna 446bp in the paper (Erives et al 1998).

Hierarchy of Regulatory Regions

Modification of Ci-Sna -444/87 by deletion

Regulated gene(s)

KH2012:KH.C3.751 (SNAI1; SNAI2; SNAI3)

Construct(s) made to test this region

CONS00000062: pCi-Sna -359/87::NLS-LacZ

Overview of functional TF binding sites in this region

5,678,9245,679,369

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment
1	bHLH	n/a	CACCTG	[5,678,929 / 5,678,934]
2	bHLH	n/a	CATATG	[5,678,951 / 5,678,956]
3	bHLH	n/a	CATTTG	[5,679,045 / 5,679,050]
4	bHLH	n/a	CAAATG	[5,679,075 / 5,679,080]

Sequence

Aniseed Coordinates: [5,678,924 / 5,679,369] on scaffold KhC3

The sequence shown is from JGI v1.0 assembly. The exact boundaries are not clear (+/- 10 nucl probably) as this was not precisely described in the article.

Reference(s)

Erives et al. (1998). Lineage-specific regulation of the Ciona snail gene in the embryonic mesoderm and neuroectoderm. Dev. Biol. 194(2):213-25