- Region 'REG00000072'
Cis-regulatory Region
Name
Ci-Sna -359/87
Short name
n/a
Region ID
REG00000072
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Albert Erives (2006-10-01)
Annotator
Patrick Lemaire (2007-11-06)
Curator
Delphine Dauga (2010-02-26)
The sequence below extends from -359 to +87 bp of the upstream start of cDNA AF002987. The precise coordinates were unclear in the original article (+/- 10 bp). No trancriptional activity.
This region is named Ci-sna 446bp in the paper (Erives et al 1998).
Modification of Ci-Sna -444/87 by deletion
- Ci-Sna -3200/codon 15 REG00000051 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3200/codon 15 delta 262bp REG00000052 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3000/-68 REG00000053 [ regulatory_region (complex_region) ]
- Ci-Sna -2200/codon 15 REG00000054 [ regulatory_region (extended_promoter) ]
- Ci-Sna -1700/-157 REG00000055 [ regulatory_region (complex_region) ]
- Ci-Sna -650/87 REG00000058 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7 mutated REG00000059 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6 mutated REG00000060 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6/E5 mutated REG00000061 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6 mutated REG00000062 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6/E5 mutated REG00000063 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E5 mutated REG00000064 [ regulatory_region (extended_promoter) ]
- Ci-Sna -444/87 REG00000069 [ regulatory_region (extended_promoter) ]
- Ci-Sna -672/-168 REG00000065 [ regulatory_region (enhancer) ]
- Ci-Sna -618/-356 REG00000066 [ regulatory_region (enhancer) ]
- Ci-Sna -3200/codon 15 delta 1.5kb REG00000214 [ regulatory_region (extended_promoter) ]
5,678,9245,679,369
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bHLH | n/a | CACCTG | [5,678,929 / 5,678,934] | |
| 2 | bHLH | n/a | CATATG | [5,678,951 / 5,678,956] | |
| 3 | bHLH | n/a | CATTTG | [5,679,045 / 5,679,050] | |
| 4 | bHLH | n/a | CAAATG | [5,679,075 / 5,679,080] |
Aniseed Coordinates: [5,678,924 / 5,679,369] on scaffold KhC3
The sequence shown is from JGI v1.0 assembly. The exact boundaries are not clear (+/- 10 nucl probably) as this was not precisely described in the article.
Show sequence
Length: 446
GTCCTCACCTGCCGCGCAGGATTGCTTCATATGGCAGACCGAGTTGAGTGGGAAATCATA
TTCTGGTTGCTTCGCTTATAGAGCTAGCTCACTAGAGACTAGAGTGTTGTGAATGATGAA
TCATTTGAATTAAGCATTTTGTTTAGTTGATCAAATGAGTTTCAGTTTGATGTTCAGGAC
TGCTAAGTAATGCAGTGAAAGGAATTCTAAAGTGATTATATTTAGAAATGGGCTATCAGT
GCTTGATTACTGTTGCAGGGTTATTTAAAAATGCAGTCGAACAGTCTAAGAAAGCTTAGC
TATATTTGAAGGATTATGTATACTTATTTCATTAGAGCAATATTTTTTTTTTTATTTTAG
ACTTTTGGTACATATTCAAAATATCAAAATTCTCACTGTGAAATATATTACTGTGATTAC
ATCATGACCTCCGTCGAGCCCATGCT
