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CIS-REGULATION

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  1. Molecular Tool 'Ci-MRF-MO1640 (Meedel 2007)' > 
  2. Transcript 'Moocul.CG.ELv1_2.S10...' > 
  3. Molecular Tool 'Cirobu.Bra>MRFaΔCH (Izzi 2013)' > 
  4. Molecular Tool 'Cirobu.Bra>MRFbNN (Izzi 2013)' > 
  5. Region 'REG00000074'

Cis-regulatory Region

Name

Ci-Sna -158/codon 15

Short name

n/a

Region ID

REG00000074

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Albert Erives (2006-10-01)

Annotator

Patrick Lemaire (2007-11-06)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

The sequence below goes from -158 upstream of start of cDNA AF002987 to codon 15 in Sna.

This region was named -158bp in the paper (Erives et al 1998).

Hierarchy of Regulatory Regions

Modification of Ci-Sna -321/codon 15 by deletion

Regulated gene(s)

KH2012:KH.C3.751 (SNAI1; SNAI2; SNAI3)

Construct(s) made to test this region

CONS00000064: pCi-Sna -158/codon 15:: NLS-LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,679,1255,680,582

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,679,125 / 5,680,582] on scaffold KhC3

JGI version 1.0 version of the region's sequence.

Show sequence

Length: 1,458

GAATTCTAAAGTGATTATATTTAGAAATGGGCTATCAGTGCTTGATTACTGTTGCAGGGT
TATTTAAAAATGCAGTCGAACAGTCTAAGAAAGCTTAGCTATATTTGAAGGATTATGTAT
ACTTATTTCATTAGAGCAATATTTTTTTTTTTATTTTAGACTTTTGGTACATATTCAAAA
TATCAAAATTCTCACTGTGAAATATATTACTGTGATTACATCATGACCTCCGTCGAGCCC
ATGCTTTATCAAGGCAAGCACGCCGTTCAGAAAAATGAAGGTATATATGCAGTCCTATTT
ATATTATAATTCATCGCGGCAATTGTTTCTCTTATAAAAATCAAACGCGATCATTTTAAA
TGTTGTAAACAGAGCAGATGCCTTTGTAAATATGCATCATCTTGTACCGAGAATCCAGCA
GAATTTTCCATGAGACTTTCGTTCACGTAAAAGTTAAATTATTTTCGGAGGTTATTTGCG
CACGGCGCGGTGTTGGAACTTTTCGCTAATCCGACTGTTTGTTTCCGCCTAAATTAATCA
CAAGTAACAGTTGCGATAAAACAAGGAAACGACTGGATCTCCCGCTGTTATAGGATGCCA
CCTCGCACGTCAAACCCCACACATACCGTAACTTTTACCTAAATAATGGAAATGCAATTA
TTTAATTACCTGTGGAAGAATCCGGACTAAGCCGAGATTGCCTAATATAGTTAGACAAGG
TCCGGTCACTCGGGCTAAACATTCAAACAGGTGGTGCCTAAAATAGATGCGAGCTGGTAC
CAAGTGTTTTGCTCGCACCGTTCCTCCCATGGGTGACTGGCTGGCTTTAAGGATGGAACG
CTACCGATATAAGTTTGACGTAATCTCGGTCTGGATGAAAGCGTTGACAGCACTACCTGT
TTGCACACTCGGCACAACTGCTGCTTATGGAAGTGAACTGCGGTTTCCCGATATGGAAAC
CGTATGGCTCAATAACAAATTATTTACGGCCCTCAGGACAGCCCGCCATGCAGTCTGCAC
CATATTTTTAATCCTGGCTTTTGCCAAGACCAAATATTACAAAGTTAAATCTTCTTTAGG
CGAATCTACCCGTCCTTGCACTTTGAGTGGAGATGACAGTTTTTACTGCAGCGGCGAATC
AACAAATTCGACGTCATCTCCCACGTCATCCATTACGTCATCGCGTTCATGTGGACCTGA
CAGCGACGAAGGTTTTCCGAGACAGGATGACCTGGATTTGCGTGACAAAGCCAGCAAAAA
CTTGCAACATAGCGTTGAGCTTTTTTGCCCTATTAAGAGCAAGTCAGTTGATCATGATAA
CGATTTAATGCCTATGGATCTCTCGTGCAAAAAGAGAACTTTCCCAAAACAAAATTGCAA
AACTGCTAGCATGCCTAAAACGAGCCCAACCATAAAATCAGAACCGATTGATGACTATCC
AGCTTCACTTACACGCAA

Reference(s)

Erives et al. (1998). Lineage-specific regulation of the Ciona snail gene in the embryonic mesoderm and neuroectoderm. Dev. Biol. 194(2):213-25

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