Login
Help

Submit your Data

  1. Region 'REG00000173'

Cis-regulatory Region

Name

Ci- beta gamma Crystallin -974/1

Short name

n/a

Region ID

REG00000173

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Sebastian M. Shimeld (2007-05-06)

Annotator

Delphine Dauga (2010-01-27)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

The 1kb intergenic region of the head-to-head-oriented Cubilin and Ci-beta-gamma crystallin genes drives the the full expression pattern of the Ci-beta-gamma Crystallin gene.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.S605.3 (CRYBB2; CRYGN; CRYGS)

Construct(s) made to test this region

CONS00000165: pCi- beta gamma Crystallin -974/1::GFP

Show in situ data
Overview of functional TF binding sites in this region

16,76217,735

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [16,762 / 17,735] on scaffold KhS605

This sequence was found using a blast on the JGI site (http://www.jgi.doe.gov/), it is the intergenic region of the head-to-head-oriented Cubilin and Ci crystallin genes (scaffold 605).

Show sequence

Length: 974

TACGTCATAATAAACATTTCAATGGGTTAATTCTTACTGTTCGGTTGAAACTCTTGAATC
CACTATGACGTCATCATCGTCGCTACAACCGCTATAAACAGCGAGAAACAAAATAAAAAC
AATCGACTTCATTACGGAAGAGTTGGGTCGAAAGTGGTTGTTGCATGAAATATATGTGTG
TTATATCTCGGTGCTAAGTGGTACAACAAACAAATAAAACGTCTGGTTTATGAGATGCTC
GCGTGGTACGGGCTATGTGATGTCATAATACCTTTGTCTATTATCCTTGTTACGACATAA
TTACCATGAAACAGCATTGTGACGTCACAGTGCTGTTTGTGTTGGACAAACAACACGTGG
TTTCTACGAGGGGGAATCCCCTCTCTGTCATTATTACGTATGATGACGTATAATATCGAT
TATTATTCACCATCCAAGGTTATATACGATATCTATTTGGTTTTATCCGCTTGGTGGCGA
CATCAATCCTCAACTACAATTGGTATTATGACGTAGTTCGTAGTTACGTCACAAGTCACA
CAACAAAGAATTTATTATGAGCAAATAAACGAACTAATATGACGCAACAATAACTAACAA
TTTATCACGTGATCGTTTTATTTATTTTGTTTGTTATGTCATAACCACTTGGTGCTTAAA
AGGGAGCTTATGACGTATTAATGAACTTTAATTATTAAAACAATCTTGCTTATCGTGCTG
TGTTACGTCATAATACATGCATTAGCAATTACTTTGTTTTGTCATAATATGAATTATGTA
ATTATCGTGACGTTGTTTGTTTTAAAAACCCATTTATTATTACGTCATAATACTTTAGAT
GGTTGTGTATGTTACGTCATAATGTTAATTGTTGAATAAAAATGAAGAAACAAAGCCATG
AAGAAGGCGGTTTGTTATAAAACATTGTTGAAGGGATGGAATTAATTATGTTGTTAACGT
TTGAATTATTGATG

Reference(s)

Shimeld et al. (2005). Urochordate betagamma-crystallin and the evolutionary origin of the vertebrate eye lens. Curr. Biol. 15(18):1684-9

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

Back to Top





By clicking "SEND", you accept the terms of our Privacy Policy.

You may choose to prevent this website from aggregating and analyzing the actions you take here. Doing so will protect your privacy, but will also prevent the owner from learning from your actions and creating a better experience for you and other users.