Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000306' > 
  2. Region 'REG00000216' > 
  3. Molecular Tool 'Zicl>Ets-VP16' > 
  4. Molecular Tool 'Zicl>Ets:WRPW' > 
  5. Region 'REG00000226'

Cis-regulatory Region

Name

Ci-ELK 7029/7163

Short name

n/a

Region ID

REG00000226

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Pierre Khoueiry (2007-11-12)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-06-09)

View position in WashU

Description

- Activity detected in the neural precursors a6.5 and b6.5 blastomers at 110 cell stage


- Coordinates on the V1.0 ciona genome: scaffold_3:781042-781175 (s3:781042)

Hierarchy of Regulatory Regions

Modification of Ci-ELK -981/7393 by deletion

Regulated gene(s)

KH2012:KH.C8.280 (KH.C8.280)

Construct(s) made to test this region

CONS00000220: Elk3 7029/7163 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

2,402,4392,402,572

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Ets n/a GGAA [7,036 / 7,039]
2 Ets n/a TTCC [7,044 / 7,047]
3 ZnF_(GATA) n/a GATA [7,060 / 7,063]
4 Ets n/a GGAA [7,073 / 7,076]
5 ZnF_(GATA) n/a TATC [7,106 / 7,109]
6 Ets n/a TTCC [7,118 / 7,121]
7 Ets n/a TTCC [7,124 / 7,127]
8 Ets n/a TTCC [7,128 / 7,131]
9 Ets n/a TTCC [7,133 / 7,136]
10 Ets n/a TTCC [7,137 / 7,140]

Sequence

Aniseed Coordinates: [2,402,439 / 2,402,572] on scaffold KhC8

Sequence from JGI V1.0

Show sequence

Length: 134


TTAACATGGAATCTATTCCCCGTGACGATGAGATAAGGACAAGCGGAAACCGACCAACGC
GTATTTCGAGAACTATTTATCTTGACTGATTCCTGTTCCTTCCTTTCCTTCCGCCCGCAG
CTTACCGGTAAACA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

Back to Top