- Region 'REG00000019' >
- Transcript 'KH2012:KH.C10.113.v2...' >
- Region 'REG00000232'
Cis-regulatory Region
Name
ZicL -200/-81
Short name
n/a
Region ID
REG00000232
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Pierre Khoueiry (2007-11-12)
Annotator
Pierre Khoueiry (2010-06-08)
Curator
Delphine Dauga (2010-06-08)
Coordinates are based on JGI transcript model.
Modification of ZicL -127/codon 7 by deletion
- ZicL -658/codon 7 REG00000033 [ regulatory_region (extended_promoter) ]
- ZicL -658/codon7 Fox2/4/5 mutated REG00000005 [ regulatory_region (extended_promoter) ]
- ZicL -658/codon 7 Ets4 mutated REG00000034 [ regulatory_region (extended_promoter) ]
- ZicL -658/codon 7 Fox2 mutated REG00000035 [ regulatory_region (extended_promoter) ]
- ZicL -658/codon 7 delta -127/-89 REG00000036 [ regulatory_region (extended_promoter) ]
- ZicL -658/codon 7 delta -205/-127 REG00000037 [ regulatory_region (extended_promoter) ]
- ZicL -658/codon 7 delta -295/-205 REG00000038 [ regulatory_region (extended_promoter) ]
- ZicL -658/codon 7 delta -205/-89 REG00000039 [ regulatory_region (extended_promoter) ]
- ZicL -295/codon 7 REG00000040 [ regulatory_region (extended_promoter) ]
1,7731,891
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | Ets | n/a | TTCC | [-169 / -166] | |
| 2 | ZnF_(GATA) | n/a | TATC | [-143 / -140] | |
| 3 | Ets | n/a | TTCC | [-116 / -113] | |
| 4 | Ets | n/a | TTCC | [-98 / -95] | |
| 5 | ZnF_(GATA) | n/a | TATC | [3,634,537 / 3,634,540] |
Aniseed Coordinates: [1,773 / 1,891] on scaffold KhL59
Sequence from JGI V1.0
Show sequence
Length: 119
CTTGGTATTTGTACCTGACGCGTGCTACGCCTTCCTTTCGTAACACAATGACTTAATTAT
CTTCTTTATCTTTATTTATTTGACTTCCGATCGCCCGTCGCTTTCCCATGCGCACGTGG
