Description

Coordinates are based on the longest KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C3.257 (SPTB; SPTBN1; SPTBN2)

Construct(s) made to test this region

CONS00000226: SPCB 5453/5600 pFOG::LacZ

Overview of functional TF binding sites in this region

5,157,3835,157,529

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment
1	Ets	n/a	TTCC	[5,157,386 / 5,157,389]
2	Ets	n/a	TTCC	[5,157,402 / 5,157,405]
3	Ets	n/a	TTCC	[5,157,436 / 5,157,439]
4	ZnF_(GATA)	n/a	GATA	[5,157,448 / 5,157,451]
5	ZnF_(GATA)	n/a	TATC	[5,157,455 / 5,157,458]
6	Ets	n/a	TTCC	[5,157,460 / 5,157,463]
7	Ets	n/a	TTCC	[5,157,464 / 5,157,467]
8	ZnF_(GATA)	n/a	GATA	[5,157,488 / 5,157,491]

Sequence

Aniseed Coordinates: [5,157,383 / 5,157,529] on scaffold KhC3

Sequence from JGI V1.0

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802