Aniseed - Cis-regulation

Region 'REG00000237'

Cis-regulatory Region

Name

ci0100138569/TBCE -236/-40

Short name

n/a

Region ID

REG00000237

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2007-11-12)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

This region does not appear to regulate ci0100138569/TBCE.

Coordinates are base on the longest KH transcript model.

Hierarchy of Regulatory Regions

ci0100138569/TBCE -236/-40 REG00000237 [ inactive_region ]

Regulated gene(s)

KH2012:KH.C4.140 (ARF1; ARF3; ARF6)

Construct(s) made to test this region

CONS00000230: ci0100138569/TBCE -236/-40 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

3,634,4353,634,629

	Motif Name	Binding Factor(s)	Sequence	Position in Region
1	Ets	n/a	TTCC	[3,634,455 / 3,634,458]
2	Ets	n/a	TTCC	[3,634,477 / 3,634,480]
3	Ets	n/a	GGAA	[3,634,500 / 3,634,503]
4	ZnF_(GATA)	n/a	TATC	[3,634,537 / 3,634,540]
5	ZnF_(GATA)	n/a	GATA	[3,634,554 / 3,634,557]
6	Ets	n/a	GGAA	[3,634,568 / 3,634,571]

Sequence

Aniseed Coordinates: [3,634,435 / 3,634,629] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 195

ACGGCCATAGTAGATTTAGCTTCCTGGTAAAAACATGAGTGGTTCCTGGCCTTTACCCTA
AACCAGGAAATAACCGCTTTGTTGTTGCGATCGCCTAATAAATATCAGCGTCTTCGTATG
ATAAACTCAATGCGGAAGTACAAAATAAAGAGACTGTATTATGTTACTCTCCTTTGACTA
ACACTGTGAGAACCA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802