Aniseed - Cis-regulation

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Region 'REG00000256'

Cis-regulatory Region

Name

TEAD-3/4 3287/3493

Short name

n/a

Region ID

REG00000256

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2007-11-18)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

Coordinates are based on the longest KH transcript model.

Hierarchy of Regulatory Regions

TEAD-3/4 3287/3493 REG00000256 [ inactive_region ]

Regulated gene(s)

KH2012:KH.S2739.1 (TEAD1; TEAD3; TEAD4)

Construct(s) made to test this region

CONS00000249: TEAD-3/4 3287/3493 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

3,117,5463,117,751

	Motif Name	Binding Factor(s)	Sequence	Position in Region
1	ZnF_(GATA)	n/a	GATA	[3,117,576 / 3,117,579]
2	ZnF_(GATA)	n/a	GATA	[3,117,581 / 3,117,584]
3	Ets	n/a	TTCC	[3,117,604 / 3,117,607]
4	Ets	n/a	TTCC	[3,117,625 / 3,117,628]
5	ZnF_(GATA)	n/a	GATA	[3,117,687 / 3,117,690]

Sequence

Aniseed Coordinates: [3,117,546 / 3,117,751] on scaffold KhC14

Sequence from JGI V1.0

Show sequence

Length: 206

ATACAACGCGTGTCGAATCTGAATGTTCAATTCAATAAATGACACAATTTAACAAGCAAT
AGATAAAAGTCATTAAACCTGGCAGAAACGTGAAAATTGCTTCAAGCGATGGCTATACAT
TACTTCCTCTTTACAACAAACAATTTCCTGGATTACGAGTTCAATGTGATAGGATAGTAG
TCCCCTTGCCAGTTAAAAACTTATAC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802