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CIS-REGULATION

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  1. Clone 'cima8107747' > 
  2. Region 'REG00000468' > 
  3. Region 'REG00000331' > 
  4. Region 'REG00000257'

Cis-regulatory Region

Name

CREB/ATF-c 3238/3404

Short name

n/a

Region ID

REG00000257

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2007-11-18)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

This region does not appear to regulate CREB/ATF-c.

Coordinates are base on the longest KH transcript model.

Hierarchy of Regulatory Regions

Modification of CREB/ATF-c 3238/5659 by deletion

Regulated gene(s)

KH2012:KH.C1.26 (ATF1; CREB1; CREM)

Construct(s) made to test this region

CONS00000250: CREB/ATF-c 3238/3404 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

7,316,9857,317,150

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Ets n/a GGAA [3,279 / 3,282]
2 Ets n/a TTCC [3,311 / 3,314]
3 ZnF_(GATA) n/a GATA [3,332 / 3,335]
4 ZnF_(GATA) n/a GATA [3,353 / 3,356]
5 ZnF_(GATA) n/a TATC [3,355 / 3,358]

Sequence

Aniseed Coordinates: [7,316,985 / 7,317,150] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 166


TCTTGCTTTGTTGTTTTTGTTTTGAAACTGGTGAGCAGCACCGGAAATTGGTCTCAGTTC
TCTAGCCAGTCTACTTCCTGCTGTTACTGCTAAACGATAACATTTCTCTTGTACATGATA
TCATTCTATGGTTCATATAAGTTGAAACACAATATGCATTACATTT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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