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CIS-REGULATION

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  1. Clone 'cien68988' > 
  2. Clone 'cien101309' > 
  3. Region 'REG00000256' > 
  4. Region 'REG00000271'

Cis-regulatory Region

Name

Ci-ELK 3450/3786

Short name

n/a

Region ID

REG00000271

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-11-25)

Annotator

Émilie Carmona (2010-06-09)

Curator

Delphine Dauga (2010-06-09)

View position in WashU

Description

This region mostly drives expression in the mesenchyme,and b-muscle. weaker b-line dorsal midline-epidermis is detected. Nerve cord though mentioned by the author is not seen on the pictures.


Coordinates are based on the longest KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-ELK -981/7393 by deletion

Regulated gene(s)

KH2012:KH.C8.280 (KH.C8.280)

Construct(s) made to test this region

CONS00000260: Ci-ELK 3450/3786 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

2,405,9472,406,283

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,405,947 / 2,406,283] on scaffold KhC8

Sequence from JGI V1.0

Show sequence

Length: 337

GGGTTGGAACAACACAGAACTGACGCCATACTGGTGCGATCTGCAGTTTTAACGTCTGTA
TTTGAACAAGACCAGGTAGAAAGTCATTGTTTTCTGGAGGCCAAGGACACCTCACATATG
GACACACACACCAGACGGATTATTGGCACATTAGAACGCGCGCTCGCACACTCGCCTACC
ATGTACCCATTGACGCGGCTCTCGGAGCCGCTTCCTGATCGAGTAACGAGTCGTTTCCGC
CTCATAGGCTAGCGGGTCTGGTCCAGCGCAACAGGGCAAAAGAGAGTGCGAACGAGGGAA
ACAGTGGGAGCTTTCCAAGCAGGTAAAGACCGAGCCT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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