Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-ELK 5385/6163

Short name

n/a

Region ID

REG00000272

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Yukio Ohtsuka (2007-11-25)

Annotator

Émilie Carmona (2010-06-09)

Curator

Delphine Dauga (2010-06-09)

View position in WashU

Description

No signals was detected with this regulatory region.

Hierarchy of Regulatory Regions

Modification of Ci-ELK -981/7393 by deletion

Ci-ELK -981/7393 REG00000306 [ no_output ]

Regulated gene(s)

KH2012:KH.C8.280 (KH.C8.280)

Construct(s) made to test this region

CONS00000261: Ci-ELK 5385/6163 pFOG-LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,403,5712,404,348

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,403,571 / 2,404,348] on scaffold KhC8

Sequence from JGI V1.0

Show sequence

Length: 778

GCTTAGCAGTCCAGATGTTGGAACTGGAAAAGCGGTAGATAGCGTGGTGCAGTGAGCGCT
GCGGTGTCATGTTTTCATCATTCGCACAATCGTCGGAAACAGGCTCCAGGCCGAACAAGG
CAACTGGAGCCAACACGCTAATTACAGCCGAATAGTGGCTTGACGTGAGTGTGCCGTGCC
TGGTCTTCATTAATAGAGCCTCCAACAAACGGGCTTGGTTGTGCGGCGAGTCAGAGCGGA
ATTGCGGTGAGGTCTTTGTGCGGTGGCGCGGGGAAATGCATTATTGTCGATTAAGAGCGG
GTGCTCGCCTGTCTATCAATAGACGTACATCCGCCCAATCTTAGGCTGTGCATTAACCGA
GCTTCCACGATTTTCCATTGTTCGCGTAAAAGCCTGCACTCCCGTTCCTGCTGCATTTGC
ATTGAATGGCAACGAATGACGAAGCCTGGAGACAAATTCTTCACGATGCCACGTCATTTG
TCACACGGTTTCCGAAGCCAAATGCCTCTATCGCGACAGCGACGACGCAAACAAATAAAA
ACACCAAAACAGCCTCGTTTCCGGCCCCCGGATACCCCAGTCGCCACCTGAGCGTTCCTA
CTTCTCCCAGCGCCCCGGCCTATCTCTCAGGTTTCGCTGGAAACGATACCTGCCCGTGAA
TTTGGTTTCCACACGGTGTATGTAACTTGTTACGGCTTCAGATCCCGTGACCCCCGCACT
GTTTACCTTCGTTCTTAACCGTGGAACGACTTCGCGACGATTAGAGGGTTATAGGGGA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802