Aniseed - Cis-regulation

Region 'REG00000274' >
Region 'REG00000273'

Cis-regulatory Region

Name

Ci-ELK 7073/7392

Short name

n/a

Region ID

REG00000273

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Yukio Ohtsuka (2007-11-25)

Annotator

Émilie Carmona (2010-06-09)

Curator

Delphine Dauga (2010-06-09)

View position in WashU

Description

No activity at late gastrula stage and weak, possibly basal promoter background, signal in mesenchyme and notochord at tailbud and larval stage.

Coordinates are based on the longest KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-ELK -981/7393 by deletion

Ci-ELK -981/7393 REG00000306 [ no_output ]

Regulated gene(s)

KH2012:KH.C8.280 (KH.C8.280)

Construct(s) made to test this region

CONS00000262: Ci-ELK 7073/7392 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,402,3422,402,660

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,402,342 / 2,402,660] on scaffold KhC8

Sequence from JGI V1.0

Show sequence

Length: 319

GCTGCGTCGGTAAATCACAGCGGAATGCGAAACTAACATTGTGTGGTGGGGTGGGGAAAG
GCCTGCTTAGTTCAGTAGTGTTGCTTCTTTAACATGGAATCTATTCCCCGTGACGATGAG
ATAAGGACAAGCGGAAACCGACCAACGCGTATTTCGAGAACTATTTATCTTGACTGATTC
CTGTTCCTTCCTTTCCTTCCGCCCGCAGCTTACCGGTAAACAAGCGCCTGCCGTACCCCG
CTGAACCGACATTGCCAGCATAGCAAACGCCCATAGCAAAATCGAAAAGTATGCCGCCCA
CCCATAAGGAAGCCGGAAT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802