Aniseed - Cis-regulation

Region 'REG00000274'

Cis-regulatory Region

Name

Ci-GABPa -2409/-1891

Short name

n/a

Region ID

REG00000274

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Yukio Ohtsuka (2007-11-25)

Annotator

Émilie Carmona (2010-06-09)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

This regions placed in front of the bra basal promoter drives expression in notochord, mesenchyme and sometimes in visceral ganglions. No activity when placed in front of the pfog basal promoter

Coordinates are base on KH transcript model.

Hierarchy of Regulatory Regions

Ci-GABPa -2409/-1891 REG00000274 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.C2.489 (TAF11)

Construct(s) made to test this region

CONS00000263: Ci-GABPa -2409/-1891 pBra::LacZ

CONS00000289: Ci-GABPa -2409/-1891 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

4,043,8274,044,344

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [4,043,827 / 4,044,344] on scaffold KhC2

Sequence from JGI V1.0

Show sequence

Length: 518

TCAAAGCAGTGTCGCAGATTTATCAGAGCACCGTCGGACACGGCCTTGCAACAATGAGAT
GTGCGATTCTTGGTCAGACTGGATAATCGGGCCATGTAGTGAGGAATGCGGTGCAGTTGG
CAGACGTCGTAGAAGCCGAACATGCGTCGGAAACGGGCTTCTTGCTCCAGTTACCGCATC
CGCTACAGATACAAGCTGCACCAATGTCTTGGAGGACTGTAATATGGGTCCATGTAACAC
TCGGTACAGTTCTTGGGGGCGATGGAGGGGTACGTGTGATAGTTCATCCTGCGGTTTCAG
CAGAACATCTCGAAGAAGATTTTGTATTGGAAGCAACGGACGCAGAACTAGAGTCTTTCA
ATGCCTGCATCTTGGCCGAGCATCTGAAAGTCGTATTTGCAATCCCACCGGTTGTCGATC
TTGGGCTCAGTGGACCACTGGTGAATGCTCTGTTTCGTGTGGCGCGGGTTCAAGAATAAG
ATCTCGGCAGTGCAACCGATATGCAGAAGTTCTTCCTG

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802