Aniseed - Cis-regulation

Region 'REG00000276'

Cis-regulatory Region

Name

Ci-Unc4A -4987/-4857

Short name

n/a

Region ID

REG00000276

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Yukio Ohtsuka (2007-11-27)

Annotator

Émilie Carmona (2010-06-10)

Curator

Delphine Dauga (2010-06-10)

View position in WashU

Description

This region placed in front of a basal promoter, drives weak expression in notochord (pbra), tail muscles (pfog) and in mesenchyme.

Coordinates are base on KH transcript model.

Hierarchy of Regulatory Regions

Ci-Unc4A -4987/-4857 REG00000276 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.C5.34 (ALX3; ALX4; UNCX)

Construct(s) made to test this region

CONS00000265: Ci-Unc4A -4987/-4857 pBra::LacZ

CONS00000292: Ci-Unc4A -4987/-4857 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

660,665660,795

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [660,665 / 660,795] on scaffold KhC5

Sequence from JGI V1.0

Show sequence

Length: 131

CGAAACACGGAAAATGGTCGTTCTAACTTATCTGTCGGAACTCGAAGTGACCAGAAACAA
AATATTTTCGATGTGTTTACTCGCAAATAATCCAGAAAGACAACATCGTACACGGCGTCG
GTCTGGTTTAA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802