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CIS-REGULATION

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  1. Region 'REG00000274' > 
  2. Region 'REG00000273' > 
  3. Region 'REG00000282'

Cis-regulatory Region

Name

Ci-FoxN2/3 -2270/-98

Short name

n/a

Region ID

REG00000282

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-11-28)

Annotator

Émilie Carmona (2010-06-07)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region drives expression in ectoderm (except for a9.33,a9.34, a9.37 and a9.38)and mesenchyme (B8.5 and B7.7)in early gastrula stage. In tailbud and larva stage, expression was detected in mesenchyme, palp, brain and tail epidermis (signal in midline was weaker).


Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.L13.24 (FOXN1; FOXN2; FOXN3)

Construct(s) made to test this region

CONS00000271: Ci-FoxN2/3 -2270/-98::LacZ

Show in situ data
Overview of functional TF binding sites in this region

164,839167,010

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [164,839 / 167,010] on scaffold KhL13

Sequence from JGI V1.0

Show sequence

Length: 2,172

CTCGCGCATCTTTGTATCCCATAGCGACATGCACTGTGGTCATGACGCGCTAATTACTAA
GATCTATTTATACAGTGGTGAGAGTCGTTGCAGTTGTTACTATCGCACGCCACTAAGACG
TCTTATTTCTTTAAATAAGACGCGCTGACGTGGCGCACAAGCACAGTGGCTATTTTCGCA
CATGCGCGCTGTTTCGTGTAACACGTCTGCAGTCGATGTATGGTCACGTGACGCCATTTC
CTGCTCTTCGCTGGTACGAGCTTGGGTTTCAGGAAACGTTACCATGGCAACTCTTTGAAT
CGTCATGGCTACCGCGTGACATCATTTCTGCATAAGCTTTAATACGCTTCCTTGCTTGCT
GAGAGAGAGGCCGAGTAGAAGCCAGTCTGGTTCGACATCTGTCGCTAGAACAAAGCCTTA
GTATCTATGCGAGTTTTTTTTCGGTTCGCGTCAAAAGATTTCAGACAGTTTTCGCTACGA
AAGATATTGAAGTGATAGATAGTACGTCATTGCTTACGCCTTATGTCAAGATCGTATAAA
CTATAAAATGTGTTTTAAATTGTTTTATATTTTTACAATCTTGCGAGTTAAAGTTGTGTT
TGACAAAAAAAATCGTGTCGTTTAAAATCTCCATGAAATATAAAGTTTCTTATCTGGTAT
TAAACTCAATACAGAATGACGTAATTCGGATTTAATTGTAGGATTAGTAACTAGGCACCA
CTGACGCCGTCTTGCATAAACATACTCGACTGCATGAAACAATACGAATGATTATGTACC
GTATCTGTTTTGTTATCTAAACGCTAGTCAGACGCTTTAAAGAAGTTTTCACAGGTTCTA
AACAGTAACACTTTATACTTGTTTTATAAAACAGCTCTTTTGGCATTTATTTGCGTATCG
AGCTGTTTTACAAAACAAGTATAACACGTATAGCGGTAACTGTTTTTATATTAAGTTTTA
ATTTCTGTGTATTGGTTTGAAACGCAGTTGTTATAGTCATTGAGAAACAACATGCTCTTA
TCGGCGAAAATATTCCAAAATAATCGGCAAAGTTGTTTACAAGCGCCGAAAGGAACAATT
CGCAATAAAGTTCTTACTTTTGCCTGAGGGTCGTGAGCTTCGGTGCGTAACGGTGAATCG
TTCTCCGGTTCATCGAATCTACGTTGTTTTAGCAATTTAACCACCAGACCTGCGCCCCAG
GCTCTGCCAGATCCATTACAAAACTTTTGTCTCCCGCTTTTACGAATCGACGCTTTAGAG
CGAATTCTTCACACTAAGATAGAAGAAAAACAACTTTGTTGAACAGGACAGAGAATTTGG
TTGACTTTAGTGTGGAGGCTTTAAAAGATTTCCAGGCAGTGAGTACGTTTATGGAGAAAC
ATCTAGGTATTTCATTACTTTGTATTCGCTATAAAGCTATACGGTCTTCTAAGTAGGTGA
GTCGTGCGTATCTAATTACGCGGTGAACTGTTTGTTTCAACCTCAGAAACGTTATATGTG
ATAATGTTTCTACTGTTTTTGGTCGCTGACTTAGTATTTACTCCAATTTGTTATATTTCC
CGTTTCGTGTGTTTTAGTCAAACTGTGCGTATTCCGTTAATCTTTCCTGTGACCGTAATC
TCTTCTTTATGATGTAAGTCTCACACGCGGGTGCGATTAATTGCGTCTGGACGATGTGTC
GAGTACACAACGTTTCCACAAATCGTGCGATACTGCTTGACCGTGGATTACTACGTTTTT
TTTAGTGTGGTTCAAGCATTTTCTGATTTGGCGTTCGTGGACTTTTTAAAGTCGGTTACG
CGAGACGACGTTCGGGGAAGTACGCACGATTGGGTTGCACTGAATGCTTTTGGTTGCTAT
GGAGATCCCATAACAGGTTGCCCAGTTCCGCGATTTTAAAACTGCAGCGTTGCCCCTTGG
CGGTTCAATGTTGCGCCAGTCGGTTGAACGTCATGTTTATGCTGATATGTGTGCTTGGCT
TTTAAATTAAAAGTGACAAACAACATACGCGTCAGCATGTGATCGAGGCGCTGTTATCCG
CAGTAATTGATTAAAGTTTTCTTCTCTTATTAGTACCACTGGTTGATTAGTTATCAGGGG
AGTGACTGTGTTTGCTTATCTTCAGAAAATGTAAATACAGTGGTTTTGAGTGGCGGATGT
GAAAAGCAAGGT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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