Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-FoxN2/3 -2270/-1899

Short name

n/a

Region ID

REG00000284

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Yukio Ohtsuka (2007-11-28)

Annotator

Clara Degos (2010-07-22)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

this region, placed upstream of the pfog basal promoter, drives expresion in muscle and mesenchyme.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-FoxN2/3 -2270/-98 by deletion

Ci-FoxN2/3 -2270/-98 REG00000282 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.L13.24 (FOXN1; FOXN2; FOXN3)

Construct(s) made to test this region

CONS00000273: Ci-FoxN2/3 -2270/-1899 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

166,641167,011

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [166,641 / 167,011] on scaffold KhL13

Sequence from JGI V1.0

Show sequence

Length: 371

ACTCGCGCATCTTTGTATCCCATAGCGACATGCACTGTGGTCATGACGCGCTAATTACTA
AGATCTATTTATACAGTGGTGAGAGTCGTTGCAGTTGTTACTATCGCACGCCACTAAGAC
GTCTTATTTCTTTAAATAAGACGCGCTGACGTGGCGCACAAGCACAGTGGCTATTTTCGC
ACATGCGCGCTGTTTCGTGTAACACGTCTGCAGTCGATGTATGGTCACGTGACGCCATTT
CCTGCTCTTCGCTGGTACGAGCTTGGGTTTCAGGAAACGTTACCATGGCAACTCTTTGAA
TCGTCATGGCTACCGCGTGACATCATTTCTGCATAAGCTTTAATACGCTTCCTTGCTTGC
TGAGAGAGAGG

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802