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CIS-REGULATION

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  1. EST 'BW226126' > 
  2. Region 'REG00000269' > 
  3. Clone 'cien175468' > 
  4. Region 'REG00000285'

Cis-regulatory Region

Name

Ci-FoxN2/3 -1205/-98

Short name

n/a

Region ID

REG00000285

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-11-28)

Annotator

Émilie Carmona (2010-06-07)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

this region drives expression in palps (weak staining in some embryos only), mesenchyme, epidermis (head and tail), brain, neck and visceral ganglion.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-FoxN2/3 -2270/-98 by deletion

Regulated gene(s)
n/a
Construct(s) made to test this region

CONS00000274: Ci-FoxN2/3 -1205/-98::LacZ

Show in situ data
Overview of functional TF binding sites in this region

164,839165,945

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [164,839 / 165,945] on scaffold KhL13

Sequence from JGI V1.0

Show sequence

Length: 1,107

CCGAAAGGAACAATTCGCAATAAAGTTCTTACTTTTGCCTGAGGGTCGTGAGCTTCGGTG
CGTAACGGTGAATCGTTCTCCGGTTCATCGAATCTACGTTGTTTTAGCAATTTAACCACC
AGACCTGCGCCCCAGGCTCTGCCAGATCCATTACAAAACTTTTGTCTCCCGCTTTTACGA
ATCGACGCTTTAGAGCGAATTCTTCACACTAAGATAGAAGAAAAACAACTTTGTTGAACA
GGACAGAGAATTTGGTTGACTTTAGTGTGGAGGCTTTAAAAGATTTCCAGGCAGTGAGTA
CGTTTATGGAGAAACATCTAGGTATTTCATTACTTTGTATTCGCTATAAAGCTATACGGT
CTTCTAAGTAGGTGAGTCGTGCGTATCTAATTACGCGGTGAACTGTTTGTTTCAACCTCA
GAAACGTTATATGTGATAATGTTTCTACTGTTTTTGGTCGCTGACTTAGTATTTACTCCA
ATTTGTTATATTTCCCGTTTCGTGTGTTTTAGTCAAACTGTGCGTATTCCGTTAATCTTT
CCTGTGACCGTAATCTCTTCTTTATGATGTAAGTCTCACACGCGGGTGCGATTAATTGCG
TCTGGACGATGTGTCGAGTACACAACGTTTCCACAAATCGTGCGATACTGCTTGACCGTG
GATTACTACGTTTTTTTTAGTGTGGTTCAAGCATTTTCTGATTTGGCGTTCGTGGACTTT
TTAAAGTCGGTTACGCGAGACGACGTTCGGGGAAGTACGCACGATTGGGTTGCACTGAAT
GCTTTTGGTTGCTATGGAGATCCCATAACAGGTTGCCCAGTTCCGCGATTTTAAAACTGC
AGCGTTGCCCCTTGGCGGTTCAATGTTGCGCCAGTCGGTTGAACGTCATGTTTATGCTGA
TATGTGTGCTTGGCTTTTAAATTAAAAGTGACAAACAACATACGCGTCAGCATGTGATCG
AGGCGCTGTTATCCGCAGTAATTGATTAAAGTTTTCTTCTCTTATTAGTACCACTGGTTG
ATTAGTTATCAGGGGAGTGACTGTGTTTGCTTATCTTCAGAAAATGTAAATACAGTGGTT
TTGAGTGGCGGATGTGAAAAGCAAGGT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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