Description

This region, placed in front of the pbra of pfog basal promoters, drives expresion in muscle, notochord and mesenchyme. It is not clear that lhx3 is its target gene as sveral other geens are located closer to the cis-reg sequence.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.L13.24 (FOXN1; FOXN2; FOXN3)

Construct(s) made to test this region

CONS00000290: Ci-Lhx3 -4480/-4185 pFOG::LacZ

CONS00000276: Ci-Lhx3 -4480/-4185 pBra::LacZ

Overview of functional TF binding sites in this region

91,52391,817

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [91,523 / 91,817] on scaffold KhS215

Sequence from JGI V1.0

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802