- Region 'REG00000276' >
- Region 'REG00000291'
Cis-regulatory Region
Name
IrxB-LacZ -2402/-1581
Short name
n/a
Region ID
REG00000291
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Yukio Ohtsuka (2007-12-02)
Annotator
Émilie Carmona (2010-06-10)
Curator
Delphine Dauga (2010-06-10)
This region placed in front of pfog basal promoter drives early expression in palp, a-epidermis, tail midline,and endoderm.
Coordinates are based on KH transcript model.
1,405,5271,406,347
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,405,527 / 1,406,347] on scaffold KhC11
Sequence from JGI V1.0
Show sequence
Length: 821
GGCAACGAATCAATTTTTCTTTGTAACAGATTCACACGAAGAAATCATTTGTTTATGACG
TCACAATCCACTTGAAATTTGTCGAATTCTCTCCGATTGTTTATTTTGCTCGTAATCGTG
ACGTAATAATCAGGAAATAATAATAGCGCTATCCGCGATGCGGGTTTTAAAAAGATTGAT
TTAATTTGAAACATGATTTTTCATGTTCAGTCTGCATTTAATTACGGTCTGCTGTGTTTT
GAACAGACTTTGCTATTTTTATACGGAGTTCAAACCGCAATTAAAATGTTGGAATTAAAA
TTCGAACAGAATCTTTTTAGTTTGTTCTTGTACAGTGTATCGAAAAGCAACGCAATGGTA
GCTGTTACGTCATAAAGTTTGTTGTTAATCCCTCTATAGTAATGAAACAATTAAATTTGT
GACGTAACAATGTGAGCAACTTTAATCTTTGTATAGACGAGCTGTGGTTGCTGTCCGCGT
TTTCTTTGTTTTTCAAATGCTAACCTACAAATGTGACGACATAATGGACCCTTCGAGCAC
AAACAAGAGGCACTAATTGTTACGTTGCAAACGATCTATTGTCATCGCCTGCTCTAAACA
ATAGAAGACACGAATCGTGTAGAAATGCAACAGTTTCGTGATTTAAATCTTGCTAATGAC
CGAAGCTAGATTCCTGAGCGAAGATATCTATTGTTTTATTGTTACGCCATAATAGAGAAC
AGTTGATCGCGTCGGCACGCGCAGATGGATAAAAATAAACCTTAAATTCGCGAGTTTTCA
AATTATGTTTATTTTATTTCCCATATCGCTGTGTTTCGTGG
