Aniseed - Cis-regulation

Clone 'cicl041m12' >
Region 'REG00000292'

Cis-regulatory Region

Name

Ci-AP2-like2 -509/-231

Short name

n/a

Region ID

REG00000292

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Yukio Ohtsuka (2007-12-02)

Annotator

Émilie Carmona (2007-12-06)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region allows detection of AP2-like2 expression in b-line ectodermal cells in tailbud stage and larvae. No expression was detected in gastrula stage.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Ci-AP2-like2 -509/-231 REG00000292 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.C7.43 (TFAP2A; TFAP2B; TFAP2E)

Construct(s) made to test this region

CONS00000279: Ci-AP2-like2 -509/-231::LacZ

Show in situ data

Overview of functional TF binding sites in this region

5,875,8335,876,110

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [5,875,833 / 5,876,110] on scaffold KhC7

Sequence from JGI V1.0

Show sequence

Length: 278

GCTGATTGTGGAACTCGTTCGACAACTAAACATCTTATTATTACGTCATAATATCAAGTT
ATACAACATCCCGTGTTCCGCATTCTAATGCATCATAAACTATTTTATGACGTAACAATC
ACCTTTGTTGTGTATTTTATGTCAATTTTCTCGTCATAAAGGAAGTGACACGTCACAATT
ACATCGCGCGATATTCGCATCGAAAGTTGAAAAAACTGATAATTGTGACGTCACAGAAAC
AATTTTCCGCAAACAATCCATCATTTATACAAAGGTGG

Reference(s)