Aniseed - Cis-regulation

Region 'REG00000309'

Cis-regulatory Region

Name

Ci-FoxC -493/-71

Short name

n/a

Region ID

REG00000309

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-12-06)

Annotator

Émilie Carmona (2010-06-09)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

Region active in pal precursors from the gastrula stage.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-FoxC -1023/-71 by deletion

Ci-FoxC -1023/-71 REG00000308 [ regulatory_region (extended_promoter) ]
- Ci-FoxC -493/-71 REG00000309 [ regulatory_region (extended_promoter) ]
  - Cirobu.REG.KH2012.L57.97883-98022.ETS_deleted REG00001194 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.L57.25 (FOXC1; FOXC2; FOXL1)

Construct(s) made to test this region

CONS00000294: Ci-FoxC -493/-71::LacZ

Show in situ data

Overview of functional TF binding sites in this region

97,64398,064

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [97,643 / 98,064] on scaffold KhL57

Sequence from JGI V1.0

Show sequence

Length: 422

CTTCCCTCACAACACTCGCACTGCCTTCGTGTCAATAATCGAATGTTTTCTGCCGGTACC
TGCCCACGACCGAGTCGAGCCTGAGCGAAGGTAAAAAGTTCATCTTCCCCTTAAACAATG
GAAAGCAGGAGCGTCATAATCCCAATCAACTTTCGCGAGGAACAATGGCGCGCTAATGAT
GCAGTAATTAGATCGTGTTTTGACAAGCTCTAAGTAGAGAACTTGGCACGCGCCGCCTTA
CGAAACACCTGCTGACACCGCTCACTATGGAGCCTTACCCAATAGCCCTGTTTATATAAA
CCACAACTTTTAAATTAATCTCTCAATCTTGGAACTTTTTAACTCCAACGTTCATTAAAA
ATGGCGGTTAACGTTCACCGTTGATATTCAGCGGTTATAACTGAAGCTGCCTCTCCTGTC
CG

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802