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CIS-REGULATION

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  1. Region 'REG00000349'
  2. Region 'REG00000227'
  3. Region 'REG00000311'

Cis-regulatory Region

Name

Ci-TGFbeta -252/-75

Short name

n/a

Region ID

REG00000311

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-12-09)

Annotator

Émilie Carmona (2010-06-08)

Curator

Delphine Dauga (2010-06-08)


Description

This region on its own drives expression in tail epidermis and part of trunk epidermis in tailbud stage and in mesenchyme in larvae.

Coordinates are base on KH transcript model.

Construct(s) made to test this region

CONS00000296: Ci-TGFbeta -252/-75::LacZ

Overview of functional TF binding sites in this region

1,881,8361,882,012

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,881,836 / 1,882,012] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 177

GGCCAAAATCTGCTTGTTCACATGCAAAACTGTCAACACAAAAGTGACAATTACCGAGTT
TACACGCATGTAAAATTATTGTAAGAAACCCGATAAGGAGACCTACTTTATCGGCCCCTT
ATCGTGGAGATTTGCAACACGCTCTAGCGTTTCAGCCGAAAGCTGTAAGCTTGTATA