Aniseed - Cis-regulation

Region 'REG00000312'

Cis-regulatory Region

Name

Ci-Znf(C3H) -212/24

Short name

n/a

Region ID

REG00000312

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-12-09)

Annotator

Émilie Carmona (2010-06-08)

Curator

Delphine Dauga (2010-06-08)

View position in WashU

Description

This region drives expression in mesenchyme, muscle,notochord, brain,
nervecord and palp in tailbud and larvae stage.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Ci-Znf(C3H) -212/24 REG00000312 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C4.182 (ZFP36; ZFP36L1; ZFP36L2)

Construct(s) made to test this region

CONS00000297: Ci-Znf(C3H) -212/24::LacZ

Show in situ data

Overview of functional TF binding sites in this region

111,054111,289

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [111,054 / 111,289] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 236

GTTTGCTACGACTGTGCTGCAGCTGTTTATATATAGCCGTGAGACGTCAATCAAATTCCT
TACAGCCAATCACGAAGCTGTAGGTGGAGCTTAAAACGGAAATCGCGCGAACAGAAGAAC
GCCGCTCTCTCGTTTCAGACAAACAAGCGGCGAAAAACAATGGATGCTCTGTTTACGTCA
TAGAGACCTTCCACAAAACGCGGTAATGTTATTTTTCTCCACACTTAAAACGAGAG

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802