- Clone 'cima8107747' >
- Region 'REG00000468' >
- Region 'REG00000331'
Cis-regulatory Region
Name
E12/E47 4415/5422
Short name
n/a
Region ID
REG00000331
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Yukio Ohtsuka (2007-12-14)
Annotator
Émilie Carmona (2010-06-08)
Curator
Patrick Lemaire (2012-03-20)
This region is inactive until tailbud stages and drives very weak expresion in larval mesenchyme and epidermis. this may be background levels.
Coordinates are based on KH transcript model.
2,136,0862,137,092
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,136,086 / 2,137,092] on scaffold KhC3
Sequence from JGI V1.0
Show sequence
Length: 1,007
TGATGAACTATTTGGTCGATGTAAATTCAACATCACGCTTTGCTGAAAAATAAATTATTC
ATCAAAAACCTTACAAATATATATTTCAAAGATCATGATGAAAGAAGATTAGAATCGAAA
TCTTTTAATTCGTGGCCATTTCAGACACGTTTTATTACGTTAGTTAATAAAAGGTTGGCT
CGCGATTACAAAGTACTTTCACACATTTTTAAGTACCATAGTGGTAGCATTGACAATACA
TCAAAGTCCTACTCTTTTGTGAGTGGTAAGATGAGGCCTAAGTGGAGCCTTTATAGAAGC
TAGGTCCGAAAAAAAATGAGGTGTTAGGTAAGTTGTATGGATAACCACATAAAGGGGTTT
TCTATAGTTTTTAGTAGCGAGGTCCAACAAAGGAAGTGGTAGCAACAAAGTGACGCTTTA
TGATGAATAGACGCACAGGTGAGAATGGGAGTTTAAAAGCTGCTTGCCCAGATAATGGTA
TGGTCGCTGTGTAGCCTTTAAGTGGCGCAGATGTAAGTTAAGCTTCACGCATATAGCGGA
CACGCTACGGTGAATGCGAACCGCTTTCTTAGCTATGAGTCATTCGGTGACGAAAAGAAC
GAAGTTCCCAACAAATAGTAGAGATCTGCCGGGGTGGGAAAACAGCGCATTTAAATCGGT
TTGAAAAAAGAACATTATTCATGGCCTTTCTCTTTGTTTCTCCCCCAGGCAAACGTACGA
GTGCCATCTGCGCGCCGTGTCGCGCTCGTTAAGCAAGCACAAAGGAAAACAAACACGTCG
TCGTGGTTCGCTCCCCGTCGGTAGTATCGGTCTCTTATCGGCCCGTTTGACGCTAAGGGT
AGCTACGAGAGATCGTTGTGCAAATGTAGCGAACGTCACAGTTGGCCTGATGCGCAAGGC
CGAGCGGAAATCGTGACTTTTCGGATTTTGTGTGCTCGTTCAAGCGTGCGACGATGGCAC
CACCTATGTCTACCACTGGGTGACGCAAAGTATCCCAACAAGACGGC
