Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-ADMP -667/-252

Short name

n/a

Region ID

REG00000332

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-12-14)

Annotator

Émilie Carmona (2007-12-14)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region allows detection of ADMP in palp, brain, a-epidermis, muscle and mesenchyme.

Coordinates are based on KH transcript models.

Hierarchy of Regulatory Regions

Ci-ADMP -667/-252 REG00000332 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C2.421 (BMP2; BMP3; GDF6)

Construct(s) made to test this region

CONS00000317: Ci-ADMP -667/-252::LacZ

Show in situ data

Overview of functional TF binding sites in this region

1,982,2871,982,701

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,982,287 / 1,982,701] on scaffold KhC2

Sequence from JGI V1.0

Show sequence

Length: 415

ATGCAACAATTGAATTGGGCTTTGTATAATTAGTATTGTCACGCATGATGCTCGCGTGGA
TTGCGTGCATTTTGATGCGGTTGCATCTTAGACCAAGACGAATTAATTAGGAAAGAGACA
CAAATTACCTTTCGGTACAGAATGATACGTGCAAATTACCTTTCTCGACGTGGTTATCGG
AGTTAATTGGCTTGCGCTTGTAATCCGTCGAAAAAGGCCGCAAGCTGTTATTGTTTGCTG
CTTGAGGTGTGAATCGGCCGTGTAATTTGTGCACCCGGTTCGATCTTCGGCCAGCTGCCA
ACCAGGTTGGATTACTCATCAAACATGATCAAGGAAAGATTCTCTCCCTTCTTTCTTCGA
GAAAAGTGCACTTACCGATTCAACTTTTCGATCGCATTTTCGCCAGAGCTTTCTG

Reference(s)