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CIS-REGULATION

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  1. Region 'REG00001198' > 
  2. Region 'REG00000710' > 
  3. Region 'REG00000707' > 
  4. Transcript 'Moocci.CG.ELv1_2.S62...' > 
  5. Region 'REG00000333'

Cis-regulatory Region

Name

Rorc -716/-582

Short name

n/a

Region ID

REG00000333

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Yukio Ohtsuka (2007-12-14)

Annotator

Émilie Carmona (2010-06-08)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

This region drives weak occasional expression in mesenchyme and muscle. Above background level?

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C3.17 (RORA; RORB; RORC)

Construct(s) made to test this region

CONS00000318: Rorc -716/-582 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

410,793410,926

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [410,793 / 410,926] on scaffold KhC3

Sequence from JGI V1.0

Show sequence

Length: 134

TGTTCCATTTTCTGAGTGTTCTAATTTGGTACTTTACAAGTTACATACCGTATGGGGATA
TAGCTCAGTGGTAGAGCATTCGACTGCAGATCGAGAGGTCCCTGGTTCAAATCCGGGTGT
CCCCTGTTTTGTTA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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