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CIS-REGULATION

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  1. Region 'REG00000276' > 
  2. Region 'REG00000291' > 
  3. Region 'REG00000467' > 
  4. Region 'REG00000335' > 
  5. Region 'REG00000336'

Cis-regulatory Region

Name

Ci-GATA -278/-76

Short name

n/a

Region ID

REG00000336

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Yukio Ohtsuka (2007-12-18)

Annotator

Émilie Carmona (2010-06-07)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

The region corresponding to Scaffold_696:17369-18302 allows detection of Ci-GATAb in a-epidermis cells (lateral and ventral).

Scaffold_696:17369-17569 : activity in mesenchyme, possibly includes basal promoter region of Gata-b.

Scaffold_696:18098-18302 : activity in a-epidermis cells when placed in front of pfog minimal promoter.


Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-GATA -1010/-76 by deletion

Regulated gene(s)

KH2012:KH.S696.1 (GATA2; GATA3; GATA4)

Construct(s) made to test this region

CONS00000321: Ci-GATA -278/-76::LacZ

Show in situ data
Overview of functional TF binding sites in this region

17,36817,569

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [17,368 / 17,569] on scaffold KhS696

Sequence from JGI V1.0

Show sequence

Length: 202

TGAGCGTGGAAATGAAACTGAAACAATTTCAAGCATATTTTATTTTTAAAGGTATATTTT
TAGTTCTAAATTATCGTTTGTTTTGTTTACTATACGATTGTGACGTAATAATCATAAAAT
CGTAACAATATGGCGATGCAGCGCAACGCGTTTCGATAACTTGGATATTACGTCATATTT
CCACCATTCATACGTCACAAAC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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