- Region 'REG00000395' >
- Region 'REG00000340'
Cis-regulatory Region
Name
Ci-ets/pointed2 -960/-206
Short name
n/a
Region ID
REG00000340
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Yukio Ohtsuka (2007-12-18)
Annotator
Émilie Carmona (2010-06-07)
Curator
Delphine Dauga (2010-06-07)
This region is very weakly active in muscle and mesenchyme with/without pfog basal promoter. This could be background.
Coordinates are based on KH transcript model.
1,402,6191,403,372
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,402,619 / 1,403,372] on scaffold KhC10
Sequence from JGI V1.0
Show sequence
Length: 754
ACCCAGACAGCAGCAACAGTTCAATAGCTGTTTGAGGAAACCGTTACGGTGGCGGGTCGC
AATGATGATACCTGCGCTATTCTACGGGGTTAAGGTTGTCCTAGCGCGTTATGTTCTTCT
GTGTCATGACGTATTTCGATTCGCATTGAATAGGAGCAGTTTTTCGCTCTGTTTTGGCCT
GGTCACGGTTCTTGGCTTTTCGTTTACCATGACAGTATAGTTGTGTGAGAAAACGACAAG
TTGTCTGCGCGAAGGTAATACACAAGTTGTGTTACCGAAATCAGCTGTGTGCGGATTTTA
GATTCCCATGATTAAATAGTCTTATAATATGTGGTTTAGAATCAATTAGATTATTATAAT
AGCACAGTTTCACTGATAGCGTGAGAGTGTTTATATTCTGTGCCAAAATTGGCTTGAACT
TCAATTCTGTTTCTTATAATTTATCTTCGTTTGTAAAGAGTAGTAATTTTGGTCATTTAT
CTTGGATTGAAGGGTCGTTTTCGATTCGGTGTCACTTGGATTTGGCTTCGGAACTTTACA
GTCGTTAATTAGAACGACGGCTTCCTGGTACGAGACGCGCCGCAGAATCGCCACAGAGGG
TTCATAAGTTAATTGAAATTACGGCTTGACTTCGGCAGCGCATGGTAAATTCTAACCTTT
GCCTGCCGCACCCTAGAGAGCCTGTTATACTGCGGTGTAAATTCGGCAATGATAGCTTTA
TCAGCAAACGCACCATGTTCTTGCCTCGCTAATA
