- Region 'REG00000341'
Cis-regulatory Region
Name
Ci-Znf(C2H2)-24 -951/-301
Short name
n/a
Region ID
REG00000341
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Yukio Ohtsuka (2007-12-18)
Annotator
Émilie Carmona (2010-06-08)
Curator
Delphine Dauga (2010-06-08)
This region on its own or in front of pfog drives occasional expression in mesenchyme, muscle and endodermal strand.
Coordinates are based on KH transcript model.
3,916,4103,917,059
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,916,410 / 3,917,059] on scaffold KhC5
Sequence from JGI V1.0
Show sequence
Length: 650
GTGTAAGAGTGGGCAAGTTATATAAAAAGCAAATTGCTGACACTTTACCGTAATTTCTGC
CCATTTTCACACCGCGATGTGTTTTGTTTTTAAAGTTAAATTTACCTTATTCACGCATTT
GATTTTAGGCATTTTAAAACAGGTTTTAAATGTATTTTGTGAATTTAAAAGCGCATTGCG
GCACGTCTTATGAAAATTTGTTAAAGCCGATTTCCTAATTTAGCCGTGTTTGTACTTTGT
TGTACAAGATAAAATCAAACCGTCTTCTGTTTGCAAGTATTCTTGCTCGGGCGAATCTGC
CTTACAAGACACCGCCGTTTCAAGCGAAGCTTCTTGTGTGCTCTGTCAATATTAGCAGAA
TCCAGAAAATAAACTTTAACTCATAAACGTATCTTGGCGGGTAGCAAAGTATTGGAAGAT
AGATTACGGAACGGCTTTGTCAGGTCGCTGGTACGACGTTTGCACGCTCTGGGGTTACCT
GGCGAAGAGAAGCCACCTTTGATTAACGCTGTTTCGCTTATGCGCAAATGTTTGGGGAGA
GACGGCGGAATACTATTATTTTACGATAGCGGAACAGCTCTGTCATTTACCAAGCCCCAT
GCGATGTATGTTTATGCCATATTACTTCTATACGAACATAATAGACCTTG
