Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-Hes-a -1624/-1410

Short name

n/a

Region ID

REG00000342

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Yukio Ohtsuka (2007-12-28)

Annotator

Émilie Carmona (2010-06-07)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

This region, placed upstream of the pfog basal promoter, drives expression in endoderm,endodermal strand, tail epidermis.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Ci-Hes-a -1624/-1410 REG00000342 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.C1.159 (HES1; HES2; HES4)

Construct(s) made to test this region

CONS00000328: Ci-Hes-a -1624/-1410 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

685,670685,883

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [685,670 / 685,883] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 214

AATGCTCCAGCCACTCACATAGATGCGACACACCGCCTAATTAAGTCGTCGCGTGAAAGC
GAGCTTTGTCCAGCTTCAAAACAACCGACAATTACCGTCTGCATCAAAACCGCAGTCTTG
AACTTAAAGCTTCTTAACCGACGACAATTTTCGGATTTACGTCACGTGGTGTGGTGGATC
ACGTGATCGGATGGCAGGTCAAACGAAAACCGCC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802