Aniseed - Cis-regulation

Region 'REG00000353' >
Region 'REG00000343'

Cis-regulatory Region

Name

Ci-ZicL -162/78

Short name

n/a

Region ID

REG00000343

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-12-28)

Annotator

Émilie Carmona (2010-06-10)

Curator

Delphine Dauga (2010-06-10)

View position in WashU

Description

This region drives expression in brain, nerve cord, endoderm, muscle and notochord from the gastrula stages or earlier.

Coordinates are based on KH transcript model.

Be careful with JGI V1.0 for this locus, the sequence is duplicated on scaffold_577.

Hierarchy of Regulatory Regions

Ci-ZicL -162/78 REG00000343 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

n/a

Construct(s) made to test this region

CONS00000329: Ci-ZicL -162/78::LacZ

Show in situ data

Overview of functional TF binding sites in this region

16,15216,391

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [16,152 / 16,391] on scaffold KhS816

Sequence from JGI V1.0

Show sequence

Length: 240

TGGTATGCTGACTGCCGTAAACTAATGACATCACGCTGATTGACCTTGGTATTTGTACCT
GTCGCGTGCTACGCCTTCCTTTCGTAACACAATGACTTAATTATCTTCTTTATCTTTATT
TATTTGACTTCCGATCGCCCGTCGCTTTCCCATGCGCACGTGGTTCGATCCCCCCACCTC
CGATATTTGCCTCGCGAAGGTAATTATCGTGTCGATCGCGCGTCTCACGCTACTTTTGGC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802