Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-FoxB -1129/-867

Short name

n/a

Region ID

REG00000347

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Yukio Ohtsuka (2007-12-28)

Annotator

Émilie Carmona (2010-06-07)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

This region is active in mesenchyme, muscle and a part of brain.

Coordinates are based on JGI transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-FoxB -4260/-759 by deletion

Ci-FoxB -4260/-759 REG00000345 [ no_output ]
- Ci-FoxB -3952/-3521 REG00000346 [ regulatory_region (enhancer) ]
- Ci-FoxB -1129/-867 REG00000347 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.C4.341 (FOXA2; FOXB1; FOXB2)

Construct(s) made to test this region

CONS00000334: Ci-FoxB -1129/-867 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

4,654,3404,654,603

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [4,654,340 / 4,654,603] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 264

ATATATAAACCCGCCTTCTCTATTTATATTGATTAATGCTTTACGCTGCTAACACGAACA
AGTGATTTTCGACACGTGCAACCGCCTTTATATACTCGCACTTTTTTCCTTTTTTTCATC
ACTTCTCGTCCAATCACAACCCAGCATCGACATAGGAGGAACAATTGCGTCATCGCTGCG
GGAGAAAATTTCATTGATTTTGACGTCACAAACAAGATTGTTTTGTTTTATTTGACAATA
ACAACTTCTGTTTGATATTTTGCA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802