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CIS-REGULATION

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  1. Region 'REG00001206' > 
  2. Region 'REG00001208' > 
  3. Region 'REG00001199' > 
  4. Region 'REG00000352' > 
  5. Region 'REG00000350'

Cis-regulatory Region

Name

Ci-RAR -697/-394

Short name

n/a

Region ID

REG00000350

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-12-28)

Annotator

Clara Degos (2010-07-22)

Curator

Delphine Dauga (2010-06-28)

View position in WashU

Description

This region on its own drives expression in muscle, mesenchyme and a part of brain at tailbud stage.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-RAR -814/-226 by deletion

Regulated gene(s)

KH2012:KH.C9.580 (RARA; RARB; RARG)

Construct(s) made to test this region

CONS00000337: Ci-RAR -697/-394::LacZ

Show in situ data
Overview of functional TF binding sites in this region

3,689,1833,689,485

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [3,689,183 / 3,689,485] on scaffold KhC9

Sequence from JGI V1.0

Show sequence

Length: 303

ACGTGAAGCAGGCATGACAGTGCAAACAAGTCATATTGTGAGAGCTCTCCTGCTCCTCAT
TAGAGAAAAAGGCAATTAGTTGGTGAGAGAAGTGAGAGAAAAGCAACGTCACTTGTATTG
GAGAAGTGCTGATGCTTGTTGGTCCGCGGTCACTGGTGAGGGAAGGCAGAAGCTGCTATG
TATTGTTTGGAAATTCGCTGCGCAGGAAATCGCTAATAAAAGCTTGATATTTTCCACGAT
AGGACTTGCGATAAGGTTAAGCCATGGTAAACTGCAACGTGCGTTCTTCCCACGTTACTA
CAC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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