Aniseed - Cis-regulation

Region 'REG00000353'

Cis-regulatory Region

Name

Ci-SoxB1 -505/-215

Short name

n/a

Region ID

REG00000353

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-01)

Annotator

Émilie Carmona (2010-06-08)

Curator

Delphine Dauga (2010-06-08)

View position in WashU

Description

This region drives strong expression in all ectodermal cells.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-SoxB1 -2021/80 by deletion

Ci-SoxB1 -2021/80 REG00000352 [ no_output ]
- Ci-SoxB1 -505/-215 REG00000353 [ regulatory_region (extended_promoter) ]
- Ci-SoxB1 -1911/-1541 REG00000354 [ inactive_region ]

Regulated gene(s)

KH2012:KH.C1.99 (SOX14; SOX2; SOX21)

Construct(s) made to test this region

CONS00000339: Ci-SoxB1 -505/-215::LacZ

Show in situ data

Overview of functional TF binding sites in this region

1,490,9931,491,282

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,490,993 / 1,491,282] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 290

CTGCTTGTCCATAGAAGAGGTCTTATAATCTATGGACTCATAACTTTCTTGGAGACAATG
CCTGAATAGAAGCTCACAATGCCACTATGAAGTCACAAAAGGCAGAATGAATGAAGTAGG
CATCTCACAGGCTGCCTTTATTGCGCTACAAACGACCTTTCTCTCGCTACGACTTATCTT
CGCGGAGGCGAACGTCGCCTTTTTCTTTTCGTTGGGATCCAGCGTTCCCTAAAGCAACCA
TCTAAACGACTTCGAATCAGCGAAAAACGTGGTCGGTTCATGATAAGACA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802