Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000355'

Cis-regulatory Region

Name

Ci-DllB -640/-111

Short name

n/a

Region ID

REG00000355

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-01)

Annotator

Émilie Carmona (2008-01-01)

Curator

Delphine Dauga (2011-08-22)

View position in WashU

Description

This region is active in a-line and b-line cells.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-DllB -926/9 by deletion

Regulated gene(s)

KH2012:KH.C7.243 (DLX1; DLX2; DLX5)

Construct(s) made to test this region

CONS00000341: Ci-DllB -640/-111::LacZ

Show in situ data
Overview of functional TF binding sites in this region

630,833631,361

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [630,833 / 631,361] on scaffold KhC7

Sequence from JGI V1.0

Show sequence

Length: 529

TGTTTTCTACAGCTATTGCGAGTACTGTGTTTACAGCAAGTACTTGGGAGTACGAAATAA
TTGTACCTTCACCTGTCGGTGATCTGACTTTATGAGGTGACTGAATTAGTAAGTCTCATT
ATAAAGCTGGCACTCGTGGAGAAGAGACAATGGTTCTTTTAATCCGGGCTCACAAGGCTA
CAATACGAGCGACCCCTTCGAAAACCGAATAATACCCGAGGCCAAATTCACCTCCCCGAC
TTGGAGTTTTTGAGAGTCGGGCTTGTGTTGGCTGCAGCCTACCGAGAAATGCATTGTTTT
TTCGACGCGCTACGATAAGAAGTCATTGTCTTTCGCTCGAGCACGTGCATTGTTTTCATA
GCGCTGCTTTTGTTGTGCACGAGTGTCGTCTCTTCGGCTTTATTCAAGTGAGTTTGTTCT
ATTGAGTTTGCATTTTAGATCACTGTAATGTTATGTTGTCGTAGCTGGAGGTGACAATGT
TTGTGTTTGTTTATTATATTCGCATGTTTAACCTCAAGCACCAATACAA

Reference(s)

Back to Top