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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C6.303.v1....' > 
  2. Transcript 'KH2012:KH.C4.84.v1.A...' > 
  3. Transcript 'KH2012:KH.C4.341.v1....' > 
  4. Region 'REG00000356'

Cis-regulatory Region

Name

Ci-Lmx -1270/106

Short name

n/a

Region ID

REG00000356

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-01)

Annotator

Émilie Carmona (2010-06-07)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region drives expression in muscle, mesenchyme, nerve cord and brain.


Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C9.616 (LHX1; LMX1A; LMX1B)

Construct(s) made to test this region

CONS00000342: Ci-Lmx -1270/106::LacZ

Show in situ data
Overview of functional TF binding sites in this region

2,931,7432,933,118

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,931,743 / 2,933,118] on scaffold KhC9

Sequence from JGI V1.0

Show sequence

Length: 1,376

TGACGATGTTTAAGTTTTTCGTCGTTAGAAGAACGCAGCATTTAACACTAGATCTTCCGA
TTAAAAGTCAGTCGCTTTATAATTTAAAAAAAACACCTGTGAAAAACTAAGATGATTACT
TTAGTATGCTGGCAATTCTGGTTATATCATTTCTTTACTTTCTTTTTTTTACTGAACTGT
CACACCAATGTGAAGTCACAGTACAACTGAAGCTTTTTAAAAATCTGTTTTTCCTTTTAA
ACTCTCAAACTTTCTCTTTTGGAAAATGGCGGCCCGGTCGATGACGGCAACAGCACAATG
ATCGGCCATGATGCGGTCACAGAATGATCGAATTTTGACAGTCGCCGCCGGTAAAATACT
GGGACGAGCAGTTAGCGCGTTTTTCTCATTCGATACTCATTCAAGTGTGTTTTGTATACG
TCCTTGTTAGCACTCGTTTCTAAACAGCAACACGACCAATGTTCTACGAACTATTTCAGT
ATTAACCCACTGTGGACAACTAAATTTCATCGCGAGAATATATAGAAGTGTGTCGGGCGT
CAGGTCCAAAGGACTTAAATTATTCATACTATTTAGGACCGTCAGAATAATACTCTCAAA
AGTTATTTGTTACTGTAAATAATGCACCGTATAAATGTATATATCATTTTCGCGCCTCTG
CCGCGTAATAGTAGGATATATGTTACGAAATACCTATAACGAGAAATAACAAAACACCGA
TATGTCTTCAACAGAACACCCGAAACTACATTTAAAATATTATTTGAAAGCCATTAAATT
TTAGATGGTCTAAGACCTTCAACGTTCCGTTTTAACCGATCTCGTCTTTCCTCAGATTAT
ATCACATCAGTTCCAAGCCCTTCGCAGCGGTATTGACAAAACTTCGGATGCTTGAGCCAC
AAATTCCTTTCGTTTCGCTGCTTAGTAGACGCGGTGTTGGTGATCGTTGACGTCATGGTG
TCCAGCATGTAACGGGACCGTAGCAAATGGATTTTCGAACTTGTTCGTAATCGGCGTGTA
ACCGATCTAGACGGTGGTGGCCAAACGCGTCTATCGGAAAGCGTTACCAGCCGCGATTCC
GAACTGAATGTATCTCACCGCGGTATTGTTCTGGCCCACACCGGGCGAACTTCGTTTACA
AAAACGTTTGCATATAATCACTGGTTTGCGTTAAATCGAACGTTAGTATACACCATACAA
GGAAAGTAGACTAGTGCCTAAAACAGCGGAATATTTCGTTCCAAGACTTCGGGCTATTTA
CTTTCAAGTTTACTATATTATGGATTACAACTTGCTGTATCAGATTCCTGTCATATATAA
ATCCAACTACAGTTTCTCTCTTGAAGCCGATGCTCTTTTGACAGCTTATGCGGCCA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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