- Transcript 'KH2012:KH.C8.104.v2....' >
- Clone 'cign048l14' >
- Transcript 'KH2012:KH.C10.402.v1...' >
- Region 'REG00000357'
Cis-regulatory Region
Name
Ci-DMRT1-1242/51
Short name
n/a
Region ID
REG00000357
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Yukio Ohtsuka (2008-01-01)
Annotator
Émilie Carmona (2010-06-07)
Curator
Delphine Dauga (2010-06-07)
This region is active in palps and brain precurosors. Expression was also detected ectopically in muscle, notochord and mesenchyme.
Coordinates are base on KH transcript model.
3,8615,154
Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
---|
Aniseed Coordinates: [3,861 / 5,154] on scaffold KhS544
Sequence from JGI V1.0
TCAGAACGAGGCGCTACATGATCAAAGCTGAGACGACGGTCGCTAGCAACAAAGTGGGAA
AATTAGAACGAAATTATCGCCGGCTTTGATTCGAGTCAAAAGTGAAAAGGAAATCGTGGC
CGACCTATATTGTTACCATTCTCAAACGGAGGGGTGTCTAGGGGTCAAGGGGTCAGAAAA
GTCGGCTCTTTCATCATAGCAGGTGTTAACAGGTGACCCTTGGATTCTTTTACTATTTTG
TTGACAAATCAACCCGAGAGTGGATACAGTAACCGTCACCAGCACCAAGCATTATAGAAA
CCCATATACCGCCACAGTAAAAGCTAATCTAAAGATCTAACTTCGGTTATGCTTCGCCGG
AGAGTTAAAATCATCATTATAGTAGGGTGGAGGAAGATGGGACACCTTTGGCACATAATA
TCCAAATATCCTTACCCCGTTTTACACAATTAACAGCGGTATATGGGAGTCGTAAGAATT
CCGTTTTATAATTATTTGCATGTTCTTTGTTTGCTACTAAATTGGACGACAAAATGTAGT
CAAAAGGTGTCTAATCTTCCCCTACCCTACTATACGACTTGGGGCATAGTTATAAAGTTA
TTCCGTTTCATTTCTTGGCGTTAACCCGACGATCAGTAATTAACGATATTCTTCATAAAT
AAATAATGCGAGAACTGCAACAGGACTAGGGAAGTTACTTAAGCGAGCATGTGATTAGAA
ATTGCCACTGAAGCACTTTAAAATGCCGCCAAAACACATACACCTTCATGACACATTGTT
TTACAGAATCTCAATTTAAAACCCGTCGACAATTATCGGATTTCCGCCGCAGAGTCACAG
GAAGTTGTTTTGCTTAATAATACTTGTTTTAGATAAGCTGTTATGTTGCTCAATGAATAA
CAATAATGTTTACGTTGGTTGTTGTGGCAATGTACATTGTAACTTCCACAAACCTCTCAG
AGGGCAAACACATTAAGCAAACTGAATTTGCCAAGTACTTCGGGAAGTCACTGATAAGCG
GACAATACGAAGCGATCACAGGGAATTGTCGCACGCCAGAATGTAAACAAAAACATCGCC
TGTGCACCGCGCGATCGAAGACACACAGCGCTGACTAATTGACCAACACAAAAGCGAGGA
AAGAAAAAAAAGCGAAAACGAGAACGGGATATTAATTGTACACGATTGTGACGTAAATTC
GAGGCATTTTTTCTTCCGAAATCGAGCGGTTTAAATACCTCGCGTCTTTATTAGGTACAA
TCATATTGCCTTGATACCTTGCTTAGAACAGTGA