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  1. Transcript 'KH2012:KH.C8.104.v2....'
  2. Clone 'cign048l14'
  3. Transcript 'KH2012:KH.C10.402.v1...'
  4. Region 'REG00000357'

Cis-regulatory Region

Name

Ci-DMRT1-1242/51

Short name

n/a

Region ID

REG00000357

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-01)

Annotator

Émilie Carmona (2010-06-07)

Curator

Delphine Dauga (2010-06-07)


Description

This region is active in palps and brain precurosors. Expression was also detected ectopically in muscle, notochord and mesenchyme.


Coordinates are base on KH transcript model.

Construct(s) made to test this region

CONS00000343: Ci-DMRT1-1242/51::LacZ

Overview of functional TF binding sites in this region

3,8615,154

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [3,861 / 5,154] on scaffold KhS544

Sequence from JGI V1.0

Show sequence

Length: 1,294

TCAGAACGAGGCGCTACATGATCAAAGCTGAGACGACGGTCGCTAGCAACAAAGTGGGAA
AATTAGAACGAAATTATCGCCGGCTTTGATTCGAGTCAAAAGTGAAAAGGAAATCGTGGC
CGACCTATATTGTTACCATTCTCAAACGGAGGGGTGTCTAGGGGTCAAGGGGTCAGAAAA
GTCGGCTCTTTCATCATAGCAGGTGTTAACAGGTGACCCTTGGATTCTTTTACTATTTTG
TTGACAAATCAACCCGAGAGTGGATACAGTAACCGTCACCAGCACCAAGCATTATAGAAA
CCCATATACCGCCACAGTAAAAGCTAATCTAAAGATCTAACTTCGGTTATGCTTCGCCGG
AGAGTTAAAATCATCATTATAGTAGGGTGGAGGAAGATGGGACACCTTTGGCACATAATA
TCCAAATATCCTTACCCCGTTTTACACAATTAACAGCGGTATATGGGAGTCGTAAGAATT
CCGTTTTATAATTATTTGCATGTTCTTTGTTTGCTACTAAATTGGACGACAAAATGTAGT
CAAAAGGTGTCTAATCTTCCCCTACCCTACTATACGACTTGGGGCATAGTTATAAAGTTA
TTCCGTTTCATTTCTTGGCGTTAACCCGACGATCAGTAATTAACGATATTCTTCATAAAT
AAATAATGCGAGAACTGCAACAGGACTAGGGAAGTTACTTAAGCGAGCATGTGATTAGAA
ATTGCCACTGAAGCACTTTAAAATGCCGCCAAAACACATACACCTTCATGACACATTGTT
TTACAGAATCTCAATTTAAAACCCGTCGACAATTATCGGATTTCCGCCGCAGAGTCACAG
GAAGTTGTTTTGCTTAATAATACTTGTTTTAGATAAGCTGTTATGTTGCTCAATGAATAA
CAATAATGTTTACGTTGGTTGTTGTGGCAATGTACATTGTAACTTCCACAAACCTCTCAG
AGGGCAAACACATTAAGCAAACTGAATTTGCCAAGTACTTCGGGAAGTCACTGATAAGCG
GACAATACGAAGCGATCACAGGGAATTGTCGCACGCCAGAATGTAAACAAAAACATCGCC
TGTGCACCGCGCGATCGAAGACACACAGCGCTGACTAATTGACCAACACAAAAGCGAGGA
AAGAAAAAAAAGCGAAAACGAGAACGGGATATTAATTGTACACGATTGTGACGTAAATTC
GAGGCATTTTTTCTTCCGAAATCGAGCGGTTTAAATACCTCGCGTCTTTATTAGGTACAA
TCATATTGCCTTGATACCTTGCTTAGAACAGTGA





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