Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-DMRT1 -335/51

Short name

n/a

Region ID

REG00000358

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-01)

Annotator

Émilie Carmona (2010-06-07)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region is active in palps and brain precursors. Expression was also detected ectopically in muscle, notochord and mesenchyme.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-DMRT1-1242/51 by deletion

Ci-DMRT1-1242/51 REG00000357 [ regulatory_region (extended_promoter) ]
- Ci-DMRT1 -335/51 REG00000358 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.S544.3 (DMRT1; DMRTA1; DMRTA2)

Construct(s) made to test this region

CONS00000344: Ci-DMRT1 -335/51::LacZ

Show in situ data

Overview of functional TF binding sites in this region

4,7695,154

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [4,769 / 5,154] on scaffold KhS544

Sequence from JGI V1.0

Show sequence

Length: 386

TTTACGTTGGTTGTTGTGGCAATGTACATTGTAACTTCCACAAACCTCTCAGAGGGCAAA
CACATTAAGCAAACTGAATTTGCCAAGTACTTCGGGAAGTCACTGATAAGCGGACAATAC
GAAGCGATCACAGGGAATTGTCGCACGCCAGAATGTAAACAAAAACATCGCCTGTGCACC
GCGCGATCGAAGACACACAGCGCTGACTAATTGACCAACACAAAAGCGAGGAAAGAAAAA
AAAGCGAAAACGAGAACGGGATATTAATTGTACACGATTGTGACGTAAATTCGAGGCATT
TTTTCTTCCGAAATCGAGCGGTTTAAATACCTCGCGTCTTTATTAGGTACAATCATATTG
CCTTGATACCTTGCTTAGAACAGTGA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802