Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-Emx -525/-111

Short name

n/a

Region ID

REG00000360

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2010-06-07)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

This region does not drive any expression by the tailbud stage.

Hierarchy of Regulatory Regions

Ci-Emx -525/-111 REG00000360 [ inactive_region ]

Regulated gene(s)

KH2012:KH.L142.14 (EMX1; EMX2; VAX1)

Construct(s) made to test this region

CONS00000346: Ci-Emx -525/-111::LacZ

Show in situ data

Overview of functional TF binding sites in this region

9,2409,653

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [9,240 / 9,653] on scaffold KhL142

Sequence from JGI V1.0

Show sequence

Length: 414

GGGGGTTAATCGCTCGTTCCTAGTGGTTGTGTGGTCTTGGGTGGAATCCGGGGACCTTGG
GTTCGAATCCCGGTGTCGCCGATACTTTTTATGCCTGTGGTAATCGTCGGAACCGCTGTC
GGGGCTTGATGAAGTCAGGTTCGCTCTTGACATCGACTTCTGGGGTGATGTACTGTACGG
GTGGAACCTACCAGAGTTGAAATTCCCGCTTTTATAAAGTTTTTCCAAAATCTCGCTGTG
GGATGACGTCACAGATAGCTTTGGTGACGTCTTTGGGTCCGATGACACCAGTGACGCGAT
GTCGAATCCGGTTTTATGCTGGGTGAGATACGAACCGCGGTCACCTACTTGATTAGGGGG
GTGGGATTGGTTAAGAATCATTCTGTTCTGTTTGATCAGAAACGCGAAACGGCT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802