Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-EphrinA-c -763/-23

Short name

n/a

Region ID

REG00000361

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2010-06-07)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region is active in head endoderm progenitors from the early tailbud stage and in notochord progenitors during tailbud stages.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Ci-EphrinA-c -763/-23 REG00000361 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C3.52 (EFNA1; EFNB1; EFNB3)

Construct(s) made to test this region

CONS00000347: Ci-EphrinA-c -763/-23::LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,800,6972,801,436

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,800,697 / 2,801,436] on scaffold KhC3

Sequence from JGI V1.0

Show sequence

Length: 740

CAGTGCTGAAAGACTTACTCCTCAGTTATATGAACACGTCACTCTGCTACCACAAACTTG
AAGGTCTGCTCTGTGTCACGTTTGCTTGTGCACTTGTTCACATATTATACTACCAAGCTA
TTGTAAACAAACGTCTCCCTTTATAGACAAAGCGTCTCCAAGGCGGCGGTAAAAAGGTGC
TCGAAGTGCACCGAGCAGCACTGCACTTGTGTTTAAGTAAACATAAGACGAACGGCTATA
TGTTCCTTCTACCAGACCATTTCCTACGGATATTCAATATTTTACTTCGCACCCAACTGG
CCTTTTGCTTCTTTCACTTTAGCAGCATTGCCGCCTTGAAATAAACAAATTGGCTGAGCT
GTACTGAGCAAACTACGCTTGTTTATGGACAGTAAACACCATTAAGCAGCGGCCTACATT
GTGCCGTAGTAACCTTGCGCATTGCTGCTAACTTCATACGTGTTCGCAGTGCACAACATT
AGTCTACCACTGACACTGGCTAACCTGTTATTATTGTAGCATTCGCACGTGTCTTATACC
TGTGTATTACGCTCCTTCTTTTCATAAACACTACAGCGCATTGCAGCTTTAATTACAAGT
ACCACAATCACTGTCCAATTGCTTCTGCCGCGAATAGTAAATCGCTTACACGGCGAGAAG
AAAAAGGCGACAGCGCTTCTTCGAACAAGGCGAGGCAAAAAAAGGCTGCTTTTGAAAATA
CGAGAGAAACGCTGGAAATG

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802