Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-EphrinA-d -742/-75

Short name

n/a

Region ID

REG00000362

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2010-06-09)

Curator

Delphine Dauga (2010-06-09)

View position in WashU

Description

This region is active in ectodermal cells from the 64 cell stage and in mesenchyme during tailbud stages.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Ci-EphrinA-d -742/-75 REG00000362 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C3.716 (EFNA1; EFNA4; EFNA5)

Construct(s) made to test this region

CONS00000348: Ci-EphrinA-d -742/-75::LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,806,8562,807,522

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,806,856 / 2,807,522] on scaffold KhC3

Sequence from JGI V1.0

Show sequence

Length: 667

TATTCTTACTGAGCTTGTGGTATTATAAAATACAAACGATTAGACGCTATCAACTTATTT
AATCGAACTGCGTTGAATTCGGTCTCACGAAACTGTAAGCTGCTTACTCTGCGAACCGAG
ATACACTGATTTGCGGTAGAGAGTCGACCGCTATAAAGCCATACAAATTACGGACTTCTT
CTCTTTTTTTCGGTCGCTGTTCGCTATTTCTCGTCTGACCAATCGAGAGTCCAGCTTATC
ATAATATTTATGCTCGCACTCGTCCCTTATCTGCTTATTAGCTTGGCGCCCACGATTTGC
AGAGTATTGGTGATAACGGTATTGTGTCCGTGTGCAATATTGCAATTGCAGCGACGAAAG
TCAAACATTGCTTACTGTACCCAAACCTGAGCGATTTCAATACATTAAGTCCCAATACAT
CAATGTCAACGACTTTGGGCTCAAACAAACGGACTTGTCTGGCATTAGTTCTAGTGTATT
AAATATGATAAATTACACCTTATAAGGAACACTTCTTATTGCTAATGTGGTAGCGTTCAT
GATCGCCTGACGTCAGAAATTAATCTTATTTCTGCAAACAAGCAGCTTCGAGCTACGATA
TAATTCGCAACCTATCAAGATGATTTATTACCGAAGCGATTTTGCCGAATCGTGAAGATT
TCCACTC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802