Aniseed - Cis-regulation

Clone 'ciad013f14' >
Clone 'cien92596' >
Region 'REG00000363'

Cis-regulatory Region

Name

Ci-delta2 -1816/235

Short name

n/a

Region ID

REG00000363

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2008-01-02)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region is the root of the delta2 analysis (meaning includes all regions tested), but it was not itself experimentally tested.

Hierarchy of Regulatory Regions

Ci-delta2 -1816/235 REG00000363 [ no_output ]
- Ci-delta2 -521/68 REG00000364 [ regulatory_region (extended_promoter) ]
- Ci-delta2 -1654/68 REG00000365 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.L50.6 (DLK2; DLL1)

Construct(s) made to test this region

n/a

Overview of functional TF binding sites in this region

31,25033,300

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [31,250 / 33,300] on scaffold KhL50

Sequence from JGI V1.0

Show sequence

Length: 2,051

ATGCTATATTGTAGAGGTAGCTGCCACGCGACCGCGAAAACCGATACGACAATCTAAGAA
TTACAAGAAGTTTTAATCCATGGAGCGTTCGGCTTGTTTCCGCTATTTCAATCTTAAGCG
TGTTGCTTTCGACAGCCATTCACATGGTATATGTGGCTGGGCATGCGTGTGGCGACAAAC
TAGTTCTACATCTGCTTAAGTTGGAATATTCGGACCTCATTGTTTCGCAGCGGAATAGCG
GTTTGGGAATTCTAGACAGGAAGCACGAAGTTCAAATGCATCGATGCTATTATTACGTCA
CAATACAAATCGTGGCTTAGATAATAAAGATGTCTCGATTTGTCATAACAGCAGGTTGTT
CTTGATATTATGACATCACAATGCCACGCGTCTAGTACGAACTTGTGTTCGCTATTGTAC
AACGTCTGTCGTATGCACTACGGTAGACTTGGTAAGGCGTATAATTTTTATTACTCTGTA
CAAAGATGGCACGCTGTGAGGCGCGTGGGCCGTTTGTTCGGCAAATTTTACTTCGGTTTT
GTTCTAGAAAAACTTCTGCTCCGGCTAGCAGCAGACCCGCGTTCGCCGCCCGATTTAAAT
AAACAGATTTCGAAACGCTTGCCCGCTCGTACAGACCTGCTACCCGGCATTGTTGGTACT
CGCCGCTACCCAACTGTCGCGCTTTATTTTAGTTTGTTTTTAGTCGCGCGCCTTTCTTAC
TACAGCTCGTGTTTCGGCCCCGCTACTAATCGCTGCTGAGTAGTCTGCCACTCTGCGCGG
GGCAGGTGTTATCGTGGGCAGTGGAATATTCCCTTAAAGAGCTGAGTCCCAGTCGCTAGT
GGATCATAACACAGTCGGTCCAGTGGCGTGCTCTCTCTATTTTACTTGGCTGCCATGCAA
GTGGTAGACGGAAGGATTAAAGGTTTGTTTGTGTCGATCGCTTTTAGCTCAGAGATGCAT
TGAGTCGTAGACTATAGGAGGATTATTACGAAACAATAGCGGCGCACGACCATGATTATT
ACGTCAGGATTAACAATTTAAAACGTCGCAAAAAAATCAGCAAATATATTCAAGCGAGTA
GCGTACAATGAGTCAGTGTTGAGATCGCTAACCTAATGTGGGGTGAGAGAGTGTATTATG
TATAAGCAAGTAAATGTTACCGGTATATGACTTTTAGGAGATTATGTGAAGTTATATAAT
ATAAAGTAATTGGAATTTTAGTTTCCAATAATTTGATTTCGTTATCGTATAATACAGCCT
GGTGAGGTTCTCACGCCAAAAGCCAAGCCATCCAGCGTATGCGGCTTGTTTGCCTGGTGT
AAACAAATTAATGAAAGGTGCTAGACTATAAGAGACTCAAATAAAATGCGGAATGAACTG
GTCATTAGAGACAGTTGAGTAGGGCGAATGGGAACGCCTATAGTTACGTTACGGGCGTAT
GAGACATGGTATGCAGTGTCGGTGACGTTCACCGGGTTTGTTAAACTTTCCCACGGTCCA
AGTTACCGGTGAGCGCCCACGGCAATCGCTGAGATATTTGTGTCGATCACTTGCGTAGAA
ATTGGAAATGATTTACAAACAATTGCATGAGTGATGTGACGGTTTGTTTTACACAGTAAG
GTGCAGTTGGTAGGGCTGTATACATGGGTGGCTTGTAAAGCACATTGATATAAGCACCGT
GGTAGCGTGTACAATGGTAGCATCGTGTAGTTCTAAAAATGTAGACAGATTGTTTTTATT
GTTACGTCACAATGCAGGCAAGGCGCCGCGAAATCGGATTTTCATGCGTTTTACGAATTT
TTCTCTTTTGTTGCAGGTTTTAACTGCGTTAAAAAAAAACTGAAACCGATAGATTGTGTT
GCAAGGTGATAAAACGTGGTTGGGGTCAAAAAGTATCTTTTCACTCCGACAGTGGAATTC
GTGCACAAAAGCAAAGATTCAAAGCGACATTTGAAGTGTGTGGGTCCATTTGCAACCATT
TGAAACACAACGATGAGCATCAAGCTTATATTACTTCTCTGCAGCGTTGCGATCGGCTTG
GCCGTGGGAAA

Reference(s)