Aniseed - Cis-regulation

Region 'REG00000366'

Cis-regulatory Region

Name

Ci-SoxC -881/-234

Short name

n/a

Region ID

REG00000366

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-05)

Annotator

Émilie Carmona (2010-06-08)

Curator

Delphine Dauga (2010-06-08)

View position in WashU

Description

This region on its own drives expression in mesenchyme, muscle, epidermis (only midline),
epidermal neurons, palps and part of brain.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Ci-SoxC -881/-234 REG00000366 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

n/a

Construct(s) made to test this region

CONS00000351: Ci-SoxC -881/-234::LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,394,0372,394,684

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,394,037 / 2,394,684] on scaffold KhC7

Sequence from JGI V1.0

Show sequence

Length: 648

ATTAAGCGCAGTAAAGGCCTGTCACTGTAAGTATACTGGCCGTATGTTTTGTTTCAGAGC
AAACACAGCCTTATGTAAGCCGGTGTAAAATAGTTTCTAGTTTATACTATATCTCAAACA
GACATATGGTTCTTTGGGGCGCTTGGCTTCTTATTACCAAAGATCGTGACGGAGGTTATC
GGGCGTTCACTCTGTTCAATTTAAAGCCTAGGGCAGTACCAGAGTCAACAGAATCAGCTG
GTTCCCGAAGCGTGCTCGTTTACCAGCTGATCGCGGCCTCTCTCTGTTTACTTTTACGGT
GACGACAAAATAGGAGAGAGGAAAAGAAAAAGGGGCATGCTATCTCTGTCCTCGTTTAAA
AAGCACGGGCAAGACTGAATTAGATTCAGTGAACAGTAAACTTGTTTTGTGCTAGGATAG
TATACGGTAAGTTAGTACTGTGACAGCAGTGCATCAGATAGTGTAACAGCCTACAGGCGT
TGTAGTTGCAGTTTATGATAGGATAAAGTATATTGTACTCAGACATTATTAAGCTGTGAC
TGCTATAGGCTTGTTGGTAGGATAAGAGTCACGTATGTATTGTTTGTTATGTGTATAGTG
TATATATGTTTAAATACGAGCTATGCGCTGTTAGTTAGTCATCAAGCT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802