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  1. Region 'REG00000374'

Cis-regulatory Region

Name

Ci-fog -556/1

Short name

n/a

Region ID

REG00000374

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Ute Rothbächer (2008-03-01)

Annotator

Émilie Carmona (2008-04-04)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-fog -2000/1 by deletion

Regulated gene(s)

KH2012:KH.C10.574 (ZBTB24; ZNF226; ZNF441)

Construct(s) made to test this region

CONS00000360: pfog -556/1::NLS-lacZ

Show in situ data
Overview of functional TF binding sites in this region

1,827,2371,827,792

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 ZnF_(GATA) n/a gata [-264 / -261]
2 ZnF_(GATA) n/a tatc [-257 / -254]

Sequence

Aniseed Coordinates: [1,827,237 / 1,827,792] on scaffold KhC10

This sequence was based on JGI Version 1.0.

Show sequence

Length: 556


CATTATGTGTGTTATTTTTGTATAGACCTGAAACAAAAATACTTTCTTGGAAAAGCTGTT
GTTGGCCAACTATTTAAATGAACTTACTGTGACCACCTGCCTTGTCAGCTGAGATTAATG
TCTCTCTACTTTAGAGTTTTAATTTAAACTGCCTTCTTCTCTTGTCAATATAATATCAAG
TTTGCATGATTGACAATGGGTCGGTACAATACACGAAGCTTATTCACTATCAGAGTTTAA
CTGAACACAAGAGCTTTGGAGCTTCGGTCTTGGACCGTTTCCTGAATTTTGAGATACTTT
ATCTTGGTCTTCTCCAGGAAGCTAGCCTTCTTTCTCTTGTTTTCTCGTTACTGCTTGTTT
TATCGCTTGCTCGATAAGCAAGATAAGAGCTAGAGCTCTGAGTGATGTCGCCCAAACCGC
GCTGACTGAATTCTATCAGCCGTATGTTTGTCTTCGGAATAGATTTGATAAGACCATGTT
TGTTTTTCATGAATTATATTATTACAGCACGAGTAATAACAAGGTTGTTTTCTATCTTAC
TAGCTGATGCCATCAT

Reference(s)

Rothbächer et al. (2007). A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm. Development 134(22):4023-32

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