Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-fog -215/1

Short name

n/a

Region ID

REG00000375

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Ute Rothbächer (2008-03-01)

Annotator

Émilie Carmona (2008-04-04)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-fog -290/1 by deletion

Ci-fog -2000/1 REG00000369 [ regulatory_region (extended_promoter) ]
- Ci-fog -556/1 REG00000374 [ regulatory_region (extended_promoter) ]
  - Ci-fog -530/1 REG00000376 [ regulatory_region (extended_promoter) ]
    - Ci-fog -354/1 REG00000377 [ regulatory_region (extended_promoter) ]
      -   Ci-fog -314/1 REG00000370 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -314/1 GATA mutated REG00000379 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -314/1 intron deleted REG00000380 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -314/1 delta intron_2GATA mutated REG00000381 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -300/1 REG00000403 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -290/1 REG00000372 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -215/1 REG00000375 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -290/1 bra enhancer added REG00000382 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -290/1 otx a-element added REG00000383 [ regulatory_region (extended_promoter) ]
        
          Ci-fog -290/1 otx a-element added_Ets mutated REG00000384 [ regulatory_region (extended_promoter) ]
- Ci-fog -2000/1 G12 REG00000378 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C10.574 (ZBTB24; ZNF226; ZNF441)

Construct(s) made to test this region

CONS00001294: p12xTCF-fog -215/1::NLS-lacZ

CONS00000361: pfog -215/1::NLS-lacZ

Show in situ data

Overview of functional TF binding sites in this region

1,827,5781,827,792

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,827,578 / 1,827,792] on scaffold KhC10

This sequence was based on JGI Version 1.0.

Show sequence

Length: 215

CATTATGTGTGTTATTTTTGTATAGACCTGAAACAAAAATACTTTCTTGGAAAAGCTGTT
GTTGGCCAACTATTTAAATGAACTTACTGTGACCACCTGCCTTGTCAGCTGAGATTAATG
TCTCTCTACTTTAGAGTTTTAATTTAAACTGCCTTCTTCTCTTGTCAATATAATATCAAG
TTTGCATGATTGACAATGGGTCGGTACAATACACG

Reference(s)

Pasini et al. (2012). Antagonizing retinoic acid and FGF/MAPK pathways control posterior body patterning in the invertebrate chordate Ciona intestinalis. PLoS ONE 7(9):e46193

Rothbächer et al. (2007). A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm. Development 134(22):4023-32