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CIS-REGULATION

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  1. Region 'REG00000454' > 
  2. Transcript 'KH2012:KH.C2.313.v1....' > 
  3. Transcript 'KH2012:KH.C9.616.v1....' > 
  4. Transcript 'KH2012:KH.C9.710.v1....' > 
  5. Region 'REG00000379'

Cis-regulatory Region

Name

Ci-fog -314/1 GATA mutated

Short name

n/a

Region ID

REG00000379

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Ute Rothbächer (2008-03-02)

Annotator

Clara Degos (2010-07-22)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-fog -314/1 by substitution

Regulated gene(s)

KH2012:KH.C10.574 (ZBTB24; ZNF226; ZNF441)

Construct(s) made to test this region

CONS00000366: pfog -314/1 GATA mutated::NLS-LacZ

Show in situ data
Overview of functional TF binding sites in this region

1,827,4791,827,792

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,827,479 / 1,827,792] on scaffold KhC10

This sequence was based on JGI Version 1.0. This sequence contains 2 mutations in GATA sites (GATA->CATA ; TATC->TTTC).

Show sequence

Length: 314

CATTATGTGTGTTATTTTTGTATAGACCTGAAACAAAAATACTTTCTTGGAAAAGCTGTT
GTTGGCCAACTATTTAAATGAACTTACTGTGACCACCTGCCTTGTCAGCTGAGATTAATG
TCTCTCTACTTTAGAGTTTTAATTTAAACTGCCTTCTTCTCTTGTCAATATAATATCAAG
TTTGCATGATTGACAATGGGTCGGTACAATACACGAAGCTTATTCACTATCAGAGTTTAA
CTGAACACAAGAGCTTTGGAGCTTCGGTCTTGGACCGTTTCCTGAATTTTGACATACTTT
TTCTTGGTCTTCTC

Reference(s)

Rothbächer et al. (2007). A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm. Development 134(22):4023-32

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